LXL04_018447 | RubberDandelionOmics

Gene overview

LXL04_018447

Reference: OH-1004 Chr: Chr04 Coordinates: 13114647-13115462 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

816 bp · LXL04_018447|LXL04_018447|OH1004|cDNA

ATGATGAATCCCGATCACCTTCTTCTACCCCGAACCAGCAGCTGTAAAAGCACCACCGCAATAGTCCCATCAAATTACATCTCCTCCACCTCCTTCATTCTCGATCCGCCATCCGCCCCCGGCGAGAAACAACTCGTCGGAAGATCAGGCTCTCCGGTAGGCTGCGCTAGGTGTTTACCGAAATTCGGTATCTCAATATTCATCCGATCAATTCTCAACATTGTATCACTCCCGACAATCCTCCCCTCTTGCCGGTGGCT...

CDS

Download CDS FASTA

816 bp · LXL04_018447|LXL04_018447|OH1004|CDS

ATGATGAATCCCGATCACCTTCTTCTACCCCGAACCAGCAGCTGTAAAAGCACCACCGCAATAGTCCCATCAAATTACATCTCCTCCACCTCCTTCATTCTCGATCCGCCATCCGCCCCCGGCGAGAAACAACTCGTCGGAAGATCAGGCTCTCCGGTAGGCTGCGCTAGGTGTTTACCGAAATTCGGTATCTCAATATTCATCCGATCAATTCTCAACATTGTATCACTCCCGACAATCCTCCCCTCTTGCCGGTGGCT...

Protein

Download Protein FASTA

271 aa · LXL04_018447|LXL04_018447|OH1004|PROTEIN

MMNPDHLLLPRTSSCKSTTAIVPSNYISSTSFILDPPSAPGEKQLVGRSGSPVGCARCLPKFGISIFIRSILNIVSLPTILPSCRWLNLPSQLSLTPSPGRKVTGTLFGNRRGHVSFAVQYDTSSAPIFLVELAVTTAALVREMSSGLVRIALECEKHNKRTAARGGGGNPKLFHEPTWSMYCNGRKSGYAQSRACSQSDWFVLSTVQSISVGAGVIPVVEDVGKKTSEGELLYMRARFERVVGSRDSEAFYMMNPDGSG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018447`
TK1151 ID	TkA08G061340
OH-1004 ID	LXL04_018447
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.600
Protein coverage (%)	TK1151 100.000 / OH-1004 99.631 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018447

Location Chr04:13114647-13115462 (-)

Description Similar to MIZ1: Protein MIZU-KUSSEI 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g41660`	Plays a role in lateral root development by maintaining auxin levels.	A gene essential for hydrotropism in roots.2007 · DOI: 10.1073/pnas.0609929104 Hormonal regulation of lateral root development in Arabidopsis modulated by MIZ1 and requirement of GNOM activity for MIZ1 function.2011 · DOI: 10.1104/pp.111.186270 MIZ1, an essential protein for root hydrotropism, is associated with the cytoplasmic face of the endoplasmic reticulum membrane in Arabidopsis root cells.2012 · DOI: 10.1016/j.febslet.2012.01.008 Light and abscisic acid signalling are integrated by MIZ1 gene expression and regulate hydrotropic response in roots of Arabidopsis thaliana.2012 · DOI: 10.1111/j.1365-3040.2012.02493.x Overexpression of MIZU-KUSSEI1 enhances the root hydrotropic response by retaining cell viability under hydrostimulated conditions in Arabidopsis thaliana.2012 · DOI: 10.1093/pcp/pcs129

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018447 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0010274 hydrotropism Biological Process

GO:1901020 negative regulation of calcium ion transmembrane transporter activity Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0032541 cortical endoplasmic reticulum Cellular Component

GO:0019855 calcium channel inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT2G41660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.369

Rank 1 · LXL04_018447 · OH-1004

Nucleus0.360

Rank 2 · LXL04_018447 · OH-1004

Mitochondrion0.149

Rank 3 · LXL04_018447 · OH-1004

Cell membrane0.144

Rank 4 · LXL04_018447 · OH-1004

Endoplasmic reticulum0.088

Rank 5 · LXL04_018447 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04759.19DUF617103-270 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018447	`PF04759.19`	DUF617	103	270	3.5e-69	232.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22227`	Arabidopsis thaliana	Protein MIZU-KUSSEI 1	55.844%	Swiss-Prot	strong database homology

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