Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1563 bp · LXL04_018419|LXL04_018419|OH1004|cDNA
ATGGATGCTCTTCGCCGGCCTAATCTTGACCTTCATTCCCCCATTTCATCACTTTACACCAAAACCCCTCAAACACCCACTTCAATTTTACCCTATAAGtaccgattctcttcttcctcCAGTTTCAGTGGTTACCATAGCAAGTGTAAAGCATCAACACCGCCTCAAGCTATCCGAAAATCAAATGAATCAGTTGAATCCAGTAAGAAAGTGGTCGATTCAATCGCTAAAGGATTAATCGGGCTCGCTGCTGCGGTTTC...
1563 bp · LXL04_018419|LXL04_018419|OH1004|CDS
ATGGATGCTCTTCGCCGGCCTAATCTTGACCTTCATTCCCCCATTTCATCACTTTACACCAAAACCCCTCAAACACCCACTTCAATTTTACCCTATAAGTACCGATTCTCTTCTTCCTCCAGTTTCAGTGGTTACCATAGCAAGTGTAAAGCATCAACACCGCCTCAAGCTATCCGAAAATCAAATGAATCAGTTGAATCCAGTAAGAAAGTGGTCGATTCAATCGCTAAAGGATTAATCGGGCTCGCTGCTGCGGTTTC...
Protein
Download Protein FASTA520 aa · LXL04_018419|LXL04_018419|OH1004|PROTEIN
MDALRRPNLDLHSPISSLYTKTPQTPTSILPYKYRFSSSSSFSGYHSKCKASTPPQAIRKSNESVESSKKVVDSIAKGLIGLAAAVSVCLDSPALAESVTIAFPASRTHEVNAVQRTLVETWGLIRETFVDPTFNHQDWDSNFQQTMVEMLPLRTADAAYSKIRGMLSTLGDPFTRIISPKEYQSFRIGSDGNVQGVGLFVNTEPNTGHLVVLSCVEGSPAARAGIHVGDELIEINGERVKGISGEAAAQKLRGHVGTTV...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018419 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018419 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:12647708-12650182 (-) | |||||||||
| Description | Similar to CTPA3: Carboxyl-terminal-processing peptidase 3, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0007165 signal transduction Biological Process GO:0005576 extracellular region Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009543 chloroplast thylakoid lumen Cellular Component GO:0009579 thylakoid Cellular Component GO:0031977 thylakoid lumen Cellular Component GO:0004175 endopeptidase activity Molecular Function GO:0004252 serine-type endopeptidase activity Molecular Function GO:0008233 peptidase activity Molecular Function | |||||||||
| KEGG gene cross-reference | ag:AAC49799 ath:AT3G57680 ath:AT4G17740 syn:slr0008 syp:SYNPCC7002_A0843 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00595.30PDZ194-264 aaPF13180.13PDZ_2201-269 aaPF17820.8PDZ_6212-264 aaPF03572.24Peptidase_S41307-479 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018419 | PF00595.30 | PDZ | 194 | 264 | 5.9e-11 | 43.3 |
| LXL04_018419 | PF13180.13 | PDZ_2 | 201 | 269 | 1.5e-08 | 35.5 |
| LXL04_018419 | PF17820.8 | PDZ_6 | 212 | 264 | 1.1e-12 | 48.2 |
| LXL04_018419 | PF03572.24 | Peptidase_S41 | 307 | 479 | 5.1e-44 | 150.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.