LXL04_018195 | RubberDandelionOmics

Gene overview

LXL04_018195

Reference: OH-1004 Chr: Chr04 Coordinates: 8439429-8442012 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1572 bp · LXL04_018195|LXL04_018195|OH1004|cDNA

ATGAGTTCTCTATCCTGTCAGATGGGTATCTTTATCGGGGTTTTATTGATCACCTACATCTGTATTTTTATGGATTCAGAAGTTCAGAACGCGAATGTTTTCATTGATGGGGAAAGAGGAATTGCAGAGATAGACACTGATTTTATTTGTGCTACAATGGATTGGTGGCCACCGGAGAAGTGCGATTATGGTTCTTGTAGCTGGGGTTATGCCTCTCTCCTCAACGTGGATCTTAACAACACAATTTTTCAAAATGCTAT...

CDS

Download CDS FASTA

1572 bp · LXL04_018195|LXL04_018195|OH1004|CDS

ATGAGTTCTCTATCCTGTCAGATGGGTATCTTTATCGGGGTTTTATTGATCACCTACATCTGTATTTTTATGGATTCAGAAGTTCAGAACGCGAATGTTTTCATTGATGGGGAAAGAGGAATTGCAGAGATAGACACTGATTTTATTTGTGCTACAATGGATTGGTGGCCACCGGAGAAGTGCGATTATGGTTCTTGTAGCTGGGGTTATGCCTCTCTCCTCAACGTGGATCTTAACAACACAATTTTTCAAAATGCTAT...

Protein

Download Protein FASTA

523 aa · LXL04_018195|LXL04_018195|OH1004|PROTEIN

MSSLSCQMGIFIGVLLITYICIFMDSEVQNANVFIDGERGIAEIDTDFICATMDWWPPEKCDYGSCSWGYASLLNVDLNNTIFQNAITAFSPLKIRLGGSLQDELVYETEDQTEPCIPFSKNTSALFNFNPGCLPLSRWDQLTSFFNKTGAVIIFGLNALNGRQVRPDGSTVGAWNSTNAESLIRYTVKKNYTMYAWELGNELSGNGVGARVTASQYVNDTITLKNIVQEIYDGIEPKPLIISPGGFFDAKWFKEYINKT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018195`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_018195

Location Chr04:8439429-8442012 (+)

Description Similar to At5g34940: Heparanase-like protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g34940`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g61250`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release
`At5g07830`	Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_018195 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006029 proteoglycan metabolic process Biological Process

GO:0007160 cell-matrix adhesion Biological Process

GO:0009826 unidimensional cell growth Biological Process

GO:0010575 positive regulation of vascular endothelial growth factor production Biological Process

GO:0030200 heparan sulfate proteoglycan catabolic process Biological Process

GO:0030202 heparin proteoglycan metabolic process Biological Process

GO:0033690 positive regulation of osteoblast proliferation Biological Process

GO:0046677 response to antibiotic Biological Process

GO:0051897 positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction Biological Process

GO:0071806 protein transmembrane transport Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

KEGG gene cross-reference

ag:BAA97804

ath:AT5G07830

ath:AT5G34940

ath:AT5G61250

hsa:10855

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.256

Rank 1 · LXL04_018195 · OH-1004

Cell membrane0.242

Rank 2 · LXL04_018195 · OH-1004

Lysosome / Vacuole0.220

Rank 3 · LXL04_018195 · OH-1004

Cytoplasm0.141

Rank 4 · LXL04_018195 · OH-1004

Endoplasmic reticulum0.110

Rank 5 · LXL04_018195 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03662.21Glyco_hydro_79n31-346 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018195	`PF03662.21`	Glyco_hydro_79n	31	346	1.7e-154	514.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FZP1`	Arabidopsis thaliana	Heparanase-like protein 3	58.902%	Swiss-Prot	strong database homology
`Q8L608`	Arabidopsis thaliana	Heparanase-like protein 2	47.940%	Swiss-Prot	moderate database homology
`Q9FF10`	Arabidopsis thaliana	Heparanase-like protein 1	47.866%	Swiss-Prot	moderate database homology

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