LXL04_018169 | RubberDandelionOmics

Gene overview

LXL04_018169

Reference: OH-1004 Chr: Chr04 Coordinates: 7964957-7966102 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1146 bp · LXL04_018169|LXL04_018169|OH1004|cDNA

ATGGGGAACGCAAAAAAATGGATCAAGAATTTGTTGGCCGGAAAGAAACACAAAAAAGCCGTCAACGAAATCCAAACACCACCCATTTCCGTCTCACCGGCAACCCCAAAGGAAAAACGTAGATGGAGCTTCCGGCGGTCTTCCGCCACACCGCCCACtaacaccaccaccaccaccaccaccaccaccaactCCATAGACGTAATCTCCATAGCACCACCACCATTAGTGCATGAAGTGGAGAATTACGAGCAGAAGAA...

CDS

Download CDS FASTA

1146 bp · LXL04_018169|LXL04_018169|OH1004|CDS

ATGGGGAACGCAAAAAAATGGATCAAGAATTTGTTGGCCGGAAAGAAACACAAAAAAGCCGTCAACGAAATCCAAACACCACCCATTTCCGTCTCACCGGCAACCCCAAAGGAAAAACGTAGATGGAGCTTCCGGCGGTCTTCCGCCACACCGCCCACTAACACCACCACCACCACCACCACCACCACCAACTCCATAGACGTAATCTCCATAGCACCACCACCATTAGTGCATGAAGTGGAGAATTACGAGCAGAAGAA...

Protein

Download Protein FASTA

381 aa · LXL04_018169|LXL04_018169|OH1004|PROTEIN

MGNAKKWIKNLLAGKKHKKAVNEIQTPPISVSPATPKEKRRWSFRRSSATPPTNTTTTTTTTTNSIDVISIAPPPLVHEVENYEQKKHVLEVAFVAAATAIVKHTAATKIQSVFRSYLARKALYALKGLVKLQALVRGHLVRKRATATLRCMQALVTVQARACARRRGSTDGITNSYYGWPDSDSDLYHVMRTPDVSEEHIKIVEMDTRSTRKSYSKERVSMHMISPAPSEPSPRAFGGHFEDFRLGSPTMKHDYAESLY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_018169`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_018169

Location Chr04:7964957-7966102 (+)

Description Similar to IQD31: Protein IQ-DOMAIN 31

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g14750`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At3g16490`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g07240`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At5g62070`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release
`At1g72670`	May be involved in cooperative interactions with calmodulins or calmodulin-like proteins (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_018169 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010091 trichome branching Biological Process

GO:0051592 response to calcium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005635 nuclear envelope Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009524 phragmoplast Cellular Component

GO:0009574 preprophase band Cellular Component

GO:0016604 nuclear body Cellular Component

GO:0005516 calmodulin binding Molecular Function

KEGG gene cross-reference

ath:AT1G72670

ath:AT3G16490

ath:AT4G14750

ath:AT5G07240

ath:AT5G62070

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.411

Rank 1 · LXL04_018169 · OH-1004

Cytoplasm0.388

Rank 2 · LXL04_018169 · OH-1004

Nucleus0.363

Rank 3 · LXL04_018169 · OH-1004

Endoplasmic reticulum0.046

Rank 4 · LXL04_018169 · OH-1004

Plastid0.033

Rank 5 · LXL04_018169 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00612.34IQ105-122 aa

PF13178.12DUF4005248-312 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_018169	`PF00612.34`	IQ	105	122	2.7e-11	42.9
LXL04_018169	`PF13178.12`	DUF4005	248	312	1.3e-10	42.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A0A1P8B590`	Arabidopsis thaliana	Protein IQ-DOMAIN 19	46.517%	Swiss-Prot	moderate database homology
`Q9LK76`	Arabidopsis thaliana	Protein IQ-domain 26	38.961%	Swiss-Prot	weak database homology
`Q9LYP2`	Arabidopsis thaliana	Protein IQ-DOMAIN 24	36.287%	Swiss-Prot	weak database homology
`Q9FIT1`	Arabidopsis thaliana	Protein IQ-DOMAIN 23	36.000%	Swiss-Prot	weak database homology
`Q9CAI2`	Arabidopsis thaliana	Protein IQ-DOMAIN 8	34.239%	Swiss-Prot	weak database homology

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