Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1053 bp · LXL04_018151|LXL04_018151|OH1004|cDNA
ATGTGTCTACTCCATCAGCAAGTGGTTCCCATGTTCATCAAACTACAAAACCACCCGATTCTTCTAGTATCTTTCTCCCAAACCAACCTCACCTACAAAATGCACACCAAACCAACATCCATCAAATCAGAACCAACATCATCACACCATAATCCAAAACCCGAATCCACTTCTATATCAGAAACCCGCGTTTATGTCCGAAAAAAGCGATCAAGAAACCCGGAACCACTCACGAAAACAGAAAAACCCGTAATCCTACC...
1053 bp · LXL04_018151|LXL04_018151|OH1004|CDS
ATGTGTCTACTCCATCAGCAAGTGGTTCCCATGTTCATCAAACTACAAAACCACCCGATTCTTCTAGTATCTTTCTCCCAAACCAACCTCACCTACAAAATGCACACCAAACCAACATCCATCAAATCAGAACCAACATCATCACACCATAATCCAAAACCCGAATCCACTTCTATATCAGAAACCCGCGTTTATGTCCGAAAAAAGCGATCAAGAAACCCGGAACCACTCACGAAAACAGAAAAACCCGTAATCCTACC...
Protein
Download Protein FASTA350 aa · LXL04_018151|LXL04_018151|OH1004|PROTEIN
MCLLHQQVVPMFIKLQNHPILLVSFSQTNLTYKMHTKPTSIKSEPTSSHHNPKPESTSISETRVYVRKKRSRNPEPLTKTEKPVILPDIEEFAYGSPRVNLPLKKPTSKVNPPANWEKVLEQIREMRSLQDAPVDSMGCEKAGISLPPKEQRFAVLISSLLSSQTKDHITHGAIKRLQDQNLLKPEAIDTTNETTLKELIYPVGFYTRKAANMVKIAKICLAKYNGDIPDTLEGLLELPGIGPKMGHLVMNVGWGNVQGI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_018151 |
|---|---|
| TK1151 ID | TkA08G023530 |
| OH-1004 ID | LXL04_018151 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 98.600 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_018151 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:7724722-7725862 (+) | |||||||||
| Description | Similar to NTH1: Endonuclease III homolog 1, chloroplastic | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006281 DNA repair Biological Process GO:0006284 base-excision repair Biological Process GO:0006285 base-excision repair, AP site formation Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0005634 nucleus Cellular Component GO:0005739 mitochondrion Cellular Component GO:0042644 chloroplast nucleoid Cellular Component GO:0000703 oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity Molecular Function GO:0003677 DNA binding Molecular Function GO:0003684 damaged DNA binding Molecular Function GO:0003690 double-stranded DNA binding Molecular Function GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT1G05900 ath:AT2G31450 bta:535203 gga:416551 mmu:18207 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00730.32HhH-GPD157-294 aaPF00633.30HHH223-250 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_018151 | PF00730.32 | HhH-GPD | 157 | 294 | 2.2e-23 | 83.4 |
| LXL04_018151 | PF00633.30 | HHH | 223 | 250 | 1.1e-06 | 28.9 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.