LXL04_017158 | RubberDandelionOmics

Gene overview

LXL04_017158

Reference: OH-1004 Chr: Chr03 Coordinates: 142275084-142277734 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1575 bp · LXL04_017158|LXL04_017158|OH1004|cDNA

ATGAGGAAGACGTCAACTCAAAAATCAAGAGTAAGTTTTTGTGATGAAGGAAGCAGTGAGATTAAGATGGCGTCAATTTCTGTTTTCAAAGCATCACACCCACTCCGAATTCAGATGCGTAGAATTCAGCGGCACCGGTGGCTGTGGGGCAGGAAGAAGGTGGTCCCGGTGGCTTTTTTAGCGCCGGTGGCTGCTGTTTGGGCTGCTTTAAACAATGCAGATATTCAGGCAGACAAGCTTTACGAGTTGCTAAAAACAAA...

CDS

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1575 bp · LXL04_017158|LXL04_017158|OH1004|CDS

ATGAGGAAGACGTCAACTCAAAAATCAAGAGTAAGTTTTTGTGATGAAGGAAGCAGTGAGATTAAGATGGCGTCAATTTCTGTTTTCAAAGCATCACACCCACTCCGAATTCAGATGCGTAGAATTCAGCGGCACCGGTGGCTGTGGGGCAGGAAGAAGGTGGTCCCGGTGGCTTTTTTAGCGCCGGTGGCTGCTGTTTGGGCTGCTTTAAACAATGCAGATATTCAGGCAGACAAGCTTTACGAGTTGCTAAAAACAAA...

Protein

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524 aa · LXL04_017158|LXL04_017158|OH1004|PROTEIN

MRKTSTQKSRVSFCDEGSSEIKMASISVFKASHPLRIQMRRIQRHRWLWGRKKVVPVAFLAPVAAVWAALNNADIQADKLYELLKTKRSRNSPVSNTWSVSDEATNEYSPVYIAPQDGLSDLDKIVTLPGQPSGVNFNQYSGYVTVNPNAGRALFYYFVESPTDSSNKPLVLWLNGGPGCSSMIGAMAELGPFRITSDGKSLFTNEYAWSNVANMLFLESPAGVGFSYSNTTSDYDHAGDKNTADDAYIFILNWLERFPQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_017158`
TK1151 ID	TkA02G071440
OH-1004 ID	LXL04_017158
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	88.900
Protein coverage (%)	TK1151 96.452 / OH-1004 87.023 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_017158

Location Chr03:142275084-142277734 (-)

Description Similar to SCP1: Serine carboxypeptidase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63470`	Probable carboxypeptidase.	No verified direct reference in this release
`At4g30610`	Active serine carboxypeptidase with broad substrate preference, including basic and hydrophilic groups.	BRS1, a serine carboxypeptidase, regulates BRI1 signaling in Arabidopsis thaliana.2001 · DOI: 10.1073/pnas.091065998 Arabidopsis BRS1 is a secreted and active serine carboxypeptidase.2005 · DOI: 10.1074/jbc.m503299200
`At2g24010`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_017158 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0009610 response to symbiotic fungus Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0036377 arbuscular mycorrhizal association Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005773 vacuole Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ath:AT2G24010

ath:AT3G63470

ath:AT4G30610

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.508

Rank 1 · LXL04_017158 · OH-1004

Extracellular0.181

Rank 2 · LXL04_017158 · OH-1004

Endoplasmic reticulum0.120

Rank 3 · LXL04_017158 · OH-1004

Cytoplasm0.115

Rank 4 · LXL04_017158 · OH-1004

Cell membrane0.086

Rank 5 · LXL04_017158 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S10129-517 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_017158	`PF00450.29`	Peptidase_S10	129	517	4.2e-127	425.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q0WRX3`	Arabidopsis thaliana	Serine carboxypeptidase-like 40	52.874%	Swiss-Prot	strong database homology
`Q9M099`	Arabidopsis thaliana	Serine carboxypeptidase 24	50.797%	Swiss-Prot	strong database homology
`O82229`	Arabidopsis thaliana	Putative serine carboxypeptidase-like 23	49.765%	Swiss-Prot	moderate database homology

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