LXL04_016986 | RubberDandelionOmics

Gene overview

LXL04_016986

Reference: OH-1004 Chr: Chr03 Coordinates: 138410007-138413467 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2967 bp · LXL04_016986|LXL04_016986|OH1004|cDNA

ATGGCTGAAGCAATAGCAGCAACTGCTGGTGTGGCAGCAGCAATTATCCAAGCTAAGGCTGCATTATGGGACCCACTTAAGCAAACAATCGCATCATCAAATGATATGGACGAAATTTATGGAGCGTTGGATGATGCAATGAAAACGCTCGTTGCAAAAAGAGACGATCACGAGGACATGAGTCAAAGGTACAAGACAACAATGACGCCATCAAACACTTATATCAACTGGAATCACAGAGTAAATGTGGTTGTAAAAGA...

CDS

Download CDS FASTA

2967 bp · LXL04_016986|LXL04_016986|OH1004|CDS

ATGGCTGAAGCAATAGCAGCAACTGCTGGTGTGGCAGCAGCAATTATCCAAGCTAAGGCTGCATTATGGGACCCACTTAAGCAAACAATCGCATCATCAAATGATATGGACGAAATTTATGGAGCGTTGGATGATGCAATGAAAACGCTCGTTGCAAAAAGAGACGATCACGAGGACATGAGTCAAAGGTACAAGACAACAATGACGCCATCAAACACTTATATCAACTGGAATCACAGAGTAAATGTGGTTGTAAAAGA...

Protein

Download Protein FASTA

988 aa · LXL04_016986|LXL04_016986|OH1004|PROTEIN

MAEAIAATAGVAAAIIQAKAALWDPLKQTIASSNDMDEIYGALDDAMKTLVAKRDDHEDMSQRYKTTMTPSNTYINWNHRVNVVVKEMDELLARYTKEKKRSSWFSIKSRANFTKKMKKTASRVFALMEEDTHLVDVLVDKKPACVVEMITSKITNIPTLQQPLEQTLGWLCDKKVKGIRIHGLVGSGKTTIMENLNNHVKVAEMFDIIIWVTISREGSMKNRSIDQIQQVIVQRLKLDIEVTTNIDLIASRIREELKNI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016986`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016986

Location Chr03:138410007-138413467 (-)

Description Similar to At4g27190: Disease resistance protein At4g27190

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27190`	Disease resistance protein.	No verified direct reference in this release
`At4g26090`	Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae.	No verified direct reference in this release
`At4g27220`	Probable disease resistance protein.	No verified direct reference in this release
`At1g63350`	Potential disease resistance protein.	No verified direct reference in this release
`At5g43730`	Probable disease resistance protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016986 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process

GO:0006952 defense response Biological Process

GO:0009626 plant-type hypersensitive response Biological Process

GO:0016045 detection of bacterium Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0098542 defense response to other organism Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0043531 ADP binding Molecular Function

KEGG gene cross-reference

ath:AT1G63350

ath:AT4G26090

ath:AT4G27190

ath:AT4G27220

ath:AT5G43730

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.590

Rank 1 · LXL04_016986 · OH-1004

Cytoplasm0.234

Rank 2 · LXL04_016986 · OH-1004

Nucleus0.166

Rank 3 · LXL04_016986 · OH-1004

Endoplasmic reticulum0.087

Rank 4 · LXL04_016986 · OH-1004

Extracellular0.044

Rank 5 · LXL04_016986 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00931.29NB-ARC161-323 aa

PF23598.2LRR_14518-702 aa

PF13855.13LRR_8533-590 aa

PF23247.2LRR_RPS2783-895 aa

PF25013.1LRR_Zer-1824-918 aa

PF23247.2LRR_RPS2851-948 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016986	`PF00931.29`	NB-ARC	161	323	2.6e-29	102.7
LXL04_016986	`PF23598.2`	LRR_14	518	702	8.9e-12	45.1
LXL04_016986	`PF13855.13`	LRR_8	533	590	7.4e-10	39.2
LXL04_016986	`PF23247.2`	LRR_RPS2	783	895	2.4e-13	51.1
LXL04_016986	`PF25013.1`	LRR_Zer-1	824	918	1.5e-08	35.6
LXL04_016986	`PF23247.2`	LRR_RPS2	851	948	2.4e-13	51.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9T048`	Arabidopsis thaliana	Disease resistance protein At4g27190	26.639%	Swiss-Prot	weak database homology
`Q42484`	Arabidopsis thaliana	Disease resistance protein RPS2	34.183%	Swiss-Prot	weak database homology
`O81825`	Arabidopsis thaliana	Probable disease resistance protein At4g27220	28.307%	Swiss-Prot	weak database homology
`Q9C8T9`	Arabidopsis thaliana	Putative disease resistance protein At1g63350	25.679%	Swiss-Prot	weak database homology
`Q9FG91`	Arabidopsis thaliana	Probable disease resistance protein At5g43730	29.874%	Swiss-Prot	weak database homology

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