LXL04_016810 | RubberDandelionOmics

Gene overview

LXL04_016810

Reference: OH-1004 Chr: Chr03 Coordinates: 134484713-134490245 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1923 bp · LXL04_016810|LXL04_016810|OH1004|cDNA

atgtatttAATGCTGAGTCCAAGCAGTTTTCTTCACAACAGTCCCAGCCATCAAGTTGGTGTTACTTCAGCCATCTGTTGCAATAGAACTACATTCAGGAGCTTTAACCACATTTCTTTTTATTCatgctcttcttcttcttcttcatgtTCAATGATCAACCAACAAATTGCTCGATCCATGACTTGTCGTGCATCCATGGAAACTGATGTTTCAATTAAGAAGGATCAAATACCACCAGCTCATGGACTATCTGAAAA...

CDS

Download CDS FASTA

1923 bp · LXL04_016810|LXL04_016810|OH1004|CDS

ATGTATTTAATGCTGAGTCCAAGCAGTTTTCTTCACAACAGTCCCAGCCATCAAGTTGGTGTTACTTCAGCCATCTGTTGCAATAGAACTACATTCAGGAGCTTTAACCACATTTCTTTTTATTCATGCTCTTCTTCTTCTTCTTCATGTTCAATGATCAACCAACAAATTGCTCGATCCATGACTTGTCGTGCATCCATGGAAACTGATGTTTCAATTAAGAAGGATCAAATACCACCAGCTCATGGACTATCTGAAAA...

Protein

Download Protein FASTA

640 aa · LXL04_016810|LXL04_016810|OH1004|PROTEIN

MYLMLSPSSFLHNSPSHQVGVTSAICCNRTTFRSFNHISFYSCSSSSSSCSMINQQIARSMTCRASMETDVSIKKDQIPPAHGLSEKIVGVLGGGQLGRMLCQAASQMSIKVNILDPLVNCPASTICHHHMVGSFDNSTTVEEFAKRCDILTVEIEHVDADTLEKLEKQGVDCQPKASTIRIIQDKFLQKVHFSRHGIPLPKFMQIDDEESAKKAGLEFGYPLMVKSRRLAYDGRGNAVAKSEQELTSAINALGGFGHGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016810`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_016810`
Location	Chr03:134484713-134490245 (-)
Description	Similar to PURKE: Phosphoribosylaminoimidazole carboxylase, chloroplastic (Fragment)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016810` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006144 purine nucleobase metabolic process Biological Process GO:0006189 'de novo' IMP biosynthetic process Biological Process GO:0009113 purine nucleobase biosynthetic process Biological Process GO:0005737 cytoplasm Cellular Component GO:0005829 cytosol Cellular Component GO:0009507 chloroplast Cellular Component GO:0004638 phosphoribosylaminoimidazole carboxylase activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	cgr:2890129 sce:YOR128C spo:2538734 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.918

Rank 1 · LXL04_016810 · OH-1004

Mitochondrion0.128

Rank 2 · LXL04_016810 · OH-1004

Cytoplasm0.031

Rank 3 · LXL04_016810 · OH-1004

Nucleus0.019

Rank 4 · LXL04_016810 · OH-1004

Peroxisome0.014

Rank 5 · LXL04_016810 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22660.3RS_preATP-grasp-like88-184 aa

PF02786.23CPSase_L_D2190-355 aa

PF02222.28ATP-grasp192-370 aa

PF07478.19Dala_Dala_lig_C194-354 aa

PF17769.8PurK_C392-453 aa

PF00731.27AIRC474-619 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016810	`PF22660.3`	RS_preATP-grasp-like	88	184	1.6e-31	109.2
LXL04_016810	`PF02786.23`	CPSase_L_D2	190	355	3.2e-06	27.5
LXL04_016810	`PF02222.28`	ATP-grasp	192	370	1e-62	211.7
LXL04_016810	`PF07478.19`	Dala_Dala_lig_C	194	354	4e-10	40.2
LXL04_016810	`PF17769.8`	PurK_C	392	453	6.5e-17	61.7
LXL04_016810	`PF00731.27`	AIRC	474	619	1.3e-66	223.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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