LXL04_016087 | RubberDandelionOmics

Gene overview

LXL04_016087

Reference: OH-1004 Chr: Chr03 Coordinates: 108855497-108861530 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1393 bp · LXL04_016087|LXL04_016087|OH1004|cDNA

aagtaaaaatatATCGTTGAATGATGAAACAGAGTCCGTTTAAGTATTGAAATGTTAAAACCCTATTCCAGAGGCTTTTGCAACCTCTCCCTCATATTTCTCAGATAAACCTCACTTCTCCACCATCAACTGTGCAGAAATGGCAAGGATAGCATGCCACCATATGGCTGCACTTCCATTGAAGTCGTCCTTGTTGACGAGCTCGTCGTCTATCTGTTTCTCGGACACCTATCTTTCCCTTGGCTTCCGTCGGCGTTTCT...

CDS

Download CDS FASTA

1254 bp · LXL04_016087|LXL04_016087|OH1004|CDS

ATGGCAAGGATAGCATGCCACCATATGGCTGCACTTCCATTGAAGTCGTCCTTGTTGACGAGCTCGTCGTCTATCTGTTTCTCGGACACCTATCTTTCCCTTGGCTTCCGTCGGCGTTTCTCTTCAAATTCCAAGATAAGCATGAGCCTCAAAGCTGGAATTGTTGGTCTCCCTAATGTTGGAAAATCCACTCTCTTCAACGCCGTTGTCGAGAATGGAAAAGCTCAGGCCGCTAATTTTCCATTTTGTACAATTGAACC...

Protein

Download Protein FASTA

417 aa · LXL04_016087|LXL04_016087|OH1004|PROTEIN

MARIACHHMAALPLKSSLLTSSSSICFSDTYLSLGFRRRFSSNSKISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSNLSKSQRSVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGQVDPKSDIDVINLELAFSDLDQIEKRIEKLKKSKATNSQIKVKEEAERSGLERIQEALMGGKPARSVGLTEFEKECISHLCLLTMKPVIYVANVA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016087`
TK1151 ID	TkA02G193970
OH-1004 ID	LXL04_016087
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.400
Protein coverage (%)	TK1151 74.118 / OH-1004 94.964 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_016087`
Location	Chr03:108855497-108861530 (-)
Description	Similar to ychF: Ribosome-binding ATPase YchF (Bacillus subtilis (strain 168)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_016087` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0006979 response to oxidative stress Biological Process GO:0005737 cytoplasm Cellular Component GO:0004857 enzyme inhibitor activity Molecular Function GO:0005524 ATP binding Molecular Function GO:0005525 GTP binding Molecular Function GO:0016887 ATP hydrolysis activity Molecular Function GO:0042803 protein homodimerization activity Molecular Function GO:0043022 ribosome binding Molecular Function GO:0043023 ribosomal large subunit binding Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	bsu:BSU40920 ecj:JW1194 eco:b1203 ecoc:C3026_07075 hin:HI_0393 pmu:PM0163 sfl:SF1206 sfx:S1290 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.851

Rank 1 · LXL04_016087 · OH-1004

Mitochondrion0.202

Rank 2 · LXL04_016087 · OH-1004

Cytoplasm0.071

Rank 3 · LXL04_016087 · OH-1004

Nucleus0.036

Rank 4 · LXL04_016087 · OH-1004

Peroxisome0.023

Rank 5 · LXL04_016087 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01926.30MMR_HSR152-160 aa

PF02421.25FeoB_N53-101 aa

PF06071.20YchF-GTPase_C333-416 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016087	`PF01926.30`	MMR_HSR1	52	160	2.9e-21	76.4
LXL04_016087	`PF02421.25`	FeoB_N	53	101	6.2e-07	29.8
LXL04_016087	`PF06071.20`	YchF-GTPase_C	333	416	2.5e-37	127.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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