LXL04_015331 | RubberDandelionOmics

Gene overview

LXL04_015331

Reference: OH-1004 Chr: Chr03 Coordinates: 68687519-68690405 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1350 bp · LXL04_015331|LXL04_015331|OH1004|cDNA

ATGGTATTTGTTGGGAGGAAGAAGAGTGGTGAAGAGGGAACGCAATTGGGGAAATACGAAATCGGAAGAACTCTAGGTGAAGGCAATTTTGGTAAAGTTAAATTCGCCAAAGACGTTCAAACTGGACACCCTTTTGCCGTTAAAATCCTTGAAAAAACCCGTATAAAAAACCTCAATTTCTCAGATCAGATAAAAAGGGAGATTGCCACATTGAAGATCCTCAAACATCCAAATGTTGTTAGATTACACGAGGTTTTGGC...

CDS

Download CDS FASTA

1350 bp · LXL04_015331|LXL04_015331|OH1004|CDS

ATGGTATTTGTTGGGAGGAAGAAGAGTGGTGAAGAGGGAACGCAATTGGGGAAATACGAAATCGGAAGAACTCTAGGTGAAGGCAATTTTGGTAAAGTTAAATTCGCCAAAGACGTTCAAACTGGACACCCTTTTGCCGTTAAAATCCTTGAAAAAACCCGTATAAAAAACCTCAATTTCTCAGATCAGATAAAAAGGGAGATTGCCACATTGAAGATCCTCAAACATCCAAATGTTGTTAGATTACACGAGGTTTTGGC...

Protein

Download Protein FASTA

449 aa · LXL04_015331|LXL04_015331|OH1004|PROTEIN

MVFVGRKKSGEEGTQLGKYEIGRTLGEGNFGKVKFAKDVQTGHPFAVKILEKTRIKNLNFSDQIKREIATLKILKHPNVVRLHEVLASKTKIYMILEYVNGGELFETIASKGKLRESDARKMFQQLIEGVGYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQHLRDDGLLHTTCGSPNYVAPEILLNRGYDGATSDTWSCGVILYVILTGYLPFDDRNLAVLYQKIFKGDVQMPKWLPSGAKNLIKRILDPNPK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_015331`
TK1151 ID	TkAUNG050120
OH-1004 ID	LXL04_015331
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	61.500
Protein coverage (%)	TK1151 51.485 / OH-1004 11.581 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_015331

Location Chr03:68687519-68690405 (+)

Description Similar to CIPK1: CBL-interacting serine/threonine-protein kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g17510`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`At1g48260`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0292200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os05g0136200`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os07g0637000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_015331 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0005634 nucleus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G48260

ath:AT3G17510

dosa:Os01g0292200

dosa:Os05g0136200

dosa:Os07g0637000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.495

Rank 1 · LXL04_015331 · OH-1004

Nucleus0.371

Rank 2 · LXL04_015331 · OH-1004

Cell membrane0.242

Rank 3 · LXL04_015331 · OH-1004

Endoplasmic reticulum0.057

Rank 4 · LXL04_015331 · OH-1004

Golgi apparatus0.054

Rank 5 · LXL04_015331 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase19-274 aa

PF07714.24PK_Tyr_Ser-Thr20-269 aa

PF14531.13Kinase-like113-261 aa

PF03822.21NAF314-373 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_015331	`PF00069.32`	Pkinase	19	274	1.7e-72	244.7
LXL04_015331	`PF07714.24`	PK_Tyr_Ser-Thr	20	269	2.2e-41	142.6
LXL04_015331	`PF14531.13`	Kinase-like	113	261	4.1e-06	27.0
LXL04_015331	`PF03822.21`	NAF	314	373	2.8e-17	63.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8RWC9`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 1	66.362%	Swiss-Prot	strong database homology
`Q94C40`	Arabidopsis thaliana	CBL-interacting serine/threonine-protein kinase 17	63.657%	Swiss-Prot	strong database homology
`Q9LGV5`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 1	62.731%	Swiss-Prot	strong database homology
`Q75L42`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 17	59.641%	Swiss-Prot	strong database homology
`Q0D4B2`	Oryza sativa subsp. japonica	CBL-interacting protein kinase 21	62.500%	Swiss-Prot	strong database homology

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