LXL04_014876 | RubberDandelionOmics

Gene overview

LXL04_014876

Reference: OH-1004 Chr: Chr03 Coordinates: 58472537-58477174 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · LXL04_014876|LXL04_014876|OH1004|cDNA

ATGCACTCAAATCATCTGCTTCTCGAAGAACCTATCAGGATGGCCTCCATCCTCGAGCCTTCTAAAGCTAGTTTTTTTCCTGCGATGACCAAAATCGTTGGAACATTAGGACCTCGTTCTCGATCTGTAGACGTCATCTCTGGTTGCCTCAAAGCTGGCATGTCCGTTGCTAGATTTGATTTCTCATGGGGAGACTGTGATTATCACCAAGAAACTTTGGAGAATCTGAAGTCTGCTGTAAAGAGCACAAAGAAGCTCTG...

CDS

Download CDS FASTA

1584 bp · LXL04_014876|LXL04_014876|OH1004|CDS

ATGCACTCAAATCATCTGCTTCTCGAAGAACCTATCAGGATGGCCTCCATCCTCGAGCCTTCTAAAGCTAGTTTTTTTCCTGCGATGACCAAAATCGTTGGAACATTAGGACCTCGTTCTCGATCTGTAGACGTCATCTCTGGTTGCCTCAAAGCTGGCATGTCCGTTGCTAGATTTGATTTCTCATGGGGAGACTGTGATTATCACCAAGAAACTTTGGAGAATCTGAAGTCTGCTGTAAAGAGCACAAAGAAGCTCTG...

Protein

Download Protein FASTA

527 aa · LXL04_014876|LXL04_014876|OH1004|PROTEIN

MHSNHLLLEEPIRMASILEPSKASFFPAMTKIVGTLGPRSRSVDVISGCLKAGMSVARFDFSWGDCDYHQETLENLKSAVKSTKKLCAVMLDTVGAEMQVVNKSEKAISLQQDDVVTLTPDEGQEATSQVLPINFAGLAKAVKTGDTIFIGQYLFTGSETTSVWLEVEKVEGVDVVCKIKNSATLAGALFTLHASQIHIDLPTLTDKDKEHISTWGVRNKIDFLSLSYTRYAEDVREAREFLSKNGDLSQTQIFAKIENV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014876`
TK1151 ID	TkA02G387620
OH-1004 ID	LXL04_014876
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014876

Location Chr03:58472537-58477174 (-)

Description Similar to Os12g0145700: Pyruvate kinase 2, cytosolic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

No hit for this species in the current source table.

Rice

Reference gene ID	Possible function	Papers / DOI
`Os12g0145700`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`UniProt: B8BM17`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`Os11g0148500`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release
`UniProt: B8BJ39`	Key regulatory enzyme of the glycolytic pathway that catalyzes the final step of glycolysis, converting ADP and phosphoenolpyruvate (PEP) to ATP and pyruvate by essentially irreversible transphosphorylation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014876 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006096 glycolytic process Biological Process

GO:0006950 response to stress Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0004743 pyruvate kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016301 kinase activity Molecular Function

GO:0030955 potassium ion binding Molecular Function

KEGG gene cross-reference

dosa:Os11g0148500

dosa:Os12g0145700

nta:107797877

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592

Rank 1 · LXL04_014876 · OH-1004

Nucleus0.428

Rank 2 · LXL04_014876 · OH-1004

Cell membrane0.088

Rank 3 · LXL04_014876 · OH-1004

Lysosome / Vacuole0.065

Rank 4 · LXL04_014876 · OH-1004

Endoplasmic reticulum0.055

Rank 5 · LXL04_014876 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00224.28PK30-360 aa

PF02887.22PK_C395-515 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014876	`PF00224.28`	PK	30	360	2.3e-89	300.4
LXL04_014876	`PF02887.22`	PK_C	395	515	1.6e-22	80.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q2QXR8`	Oryza sativa subsp. japonica	Pyruvate kinase 2, cytosolic	89.184%	Swiss-Prot	strong database homology
`B8BM17`	Oryza sativa subsp. indica	Pyruvate kinase 2, cytosolic	89.184%	Swiss-Prot	strong database homology
`Q2RAK2`	Oryza sativa subsp. japonica	Pyruvate kinase 1, cytosolic	89.374%	Swiss-Prot	strong database homology
`B8BJ39`	Oryza sativa subsp. indica	Pyruvate kinase 1, cytosolic	89.374%	Swiss-Prot	strong database homology

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