LXL04_014853 | RubberDandelionOmics

Gene overview

LXL04_014853

Reference: OH-1004 Chr: Chr03 Coordinates: 58119329-58122381 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1182 bp · LXL04_014853|LXL04_014853|OH1004|cDNA

ATGACAAATTCTGTTGATAATGATAATGTACGGTTATTTTTAGGAGACTATTGGTCTGACATATAGTTTGAAAGGCCGTCTACAAATTCTCCCCGTCGGAAATTTATCGACTCATTGATTTGGTGGGGAAGGGATATGGAGTATTTTAAGCTTCGAATCTTATTAATATTTCTTCTTATCGCCGAGATCAATGGCGAACCTATAGTTCCGGCGTTATGCTTCTTCGGTGACTCTGTAATGGACGCCGGAAACAACAATCA...

CDS

Download CDS FASTA

1068 bp · LXL04_014853|LXL04_014853|OH1004|CDS

TTGATTTGGTGGGGAAGGGATATGGAGTATTTTAAGCTTCGAATCTTATTAATATTTCTTCTTATCGCCGAGATCAATGGCGAACCTATAGTTCCGGCGTTATGCTTCTTCGGTGACTCTGTAATGGACGCCGGAAACAACAATCACCTCACTACTTTGCTCCGAGCAAACTTTCTTCCTTACGGAAGAGACTTCATTGATCATAAACCTACAGGCAGGTTCTGCAACGGAAAACTAGCGGCCGATTACACTGCTGAATT...

Protein

Download Protein FASTA

355 aa · LXL04_014853|LXL04_014853|OH1004|PROTEIN

MIWWGRDMEYFKLRILLIFLLIAEINGEPIVPALCFFGDSVMDAGNNNHLTTLLRANFLPYGRDFIDHKPTGRFCNGKLAADYTAEFLGFETYPPPYLSRIDNESLLLTGANFASAGSGYYDETALIYQALSLRRQLSHYKDWQNRVVAMVGGEKAKEIFATGIHILSAGSSDFLQNYDINPVLNRIYSPPQFSDILITSYITFVEGLYDVGVRRFGVISLPPIGCLPAAITLLNLGSNDCMEDLNDEALMFNNKLNETS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014853`
TK1151 ID	TkA02G391920
OH-1004 ID	LXL04_014853
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 90.331 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014853

Location Chr03:58119329-58122381 (+)

Description Similar to At5g03810: GDSL esterase/lipase At5g03810

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g03810`	GDSL esterase/lipase At5g03810.	No verified direct reference in this release
`At5g03820`	GDSL esterase/lipase At5g03820.	No verified direct reference in this release
`At3g53100`	GDSL esterase/lipase At3g53100.	No verified direct reference in this release
`At5g22810`	GDSL esterase/lipase At5g22810.	No verified direct reference in this release
`At3g16370`	GDSL esterase/lipase APG.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014853 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0048046 apoplast Cellular Component

GO:0016298 lipase activity Molecular Function

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT3G16370

ath:AT3G53100

ath:AT5G03810

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.406

Rank 1 · LXL04_014853 · OH-1004

Lysosome / Vacuole0.217

Rank 2 · LXL04_014853 · OH-1004

Endoplasmic reticulum0.104

Rank 3 · LXL04_014853 · OH-1004

Cytoplasm0.086

Rank 4 · LXL04_014853 · OH-1004

Cell membrane0.081

Rank 5 · LXL04_014853 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL36-345 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014853	`PF00657.29`	Lipase_GDSL	36	345	7.5e-30	105.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FFN0`	Arabidopsis thaliana	GDSL esterase/lipase At5g03810	62.424%	Swiss-Prot	strong database homology
`Q9LZC5`	Arabidopsis thaliana	GDSL esterase/lipase At5g03820	62.236%	Swiss-Prot	strong database homology
`Q0WPI9`	Arabidopsis thaliana	GDSL esterase/lipase At3g53100	55.714%	Swiss-Prot	strong database homology
`Q9FFC6`	Arabidopsis thaliana	GDSL esterase/lipase At5g22810	53.501%	Swiss-Prot	strong database homology
`Q9LU14`	Arabidopsis thaliana	GDSL esterase/lipase APG	52.695%	Swiss-Prot	strong database homology

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