LXL04_014760 | RubberDandelionOmics

Gene overview

LXL04_014760

Reference: OH-1004 Chr: Chr03 Coordinates: 56432170-56433588 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

858 bp · LXL04_014760|LXL04_014760|OH1004|cDNA

ATGGGAAGGCCACCATGCTGTGATAAGGTTGGCGTCAAGAAAGGCCCATGGACCCCTGAAGAAGACATCATTTTGGTCTCTTACATTCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACCAACACTGGTCTTTTAAGATGCAGCAAGAGTTGCAGACTAAGATGGACTAATTATCTAAGGCCAGGTATCAAAAGGGGCAACTTCACTCCACATGAAGAAGGGATGATAGTTCACCTCCAAGCATTATTGGGTAA...

CDS

Download CDS FASTA

858 bp · LXL04_014760|LXL04_014760|OH1004|CDS

ATGGGAAGGCCACCATGCTGTGATAAGGTTGGCGTCAAGAAAGGCCCATGGACCCCTGAAGAAGACATCATTTTGGTCTCTTACATTCAAGAACATGGTCCTGGAAATTGGAGATCAGTGCCTACCAACACTGGTCTTTTAAGATGCAGCAAGAGTTGCAGACTAAGATGGACTAATTATCTAAGGCCAGGTATCAAAAGGGGCAACTTCACTCCACATGAAGAAGGGATGATAGTTCACCTCCAAGCATTATTGGGTAA...

Protein

Download Protein FASTA

285 aa · LXL04_014760|LXL04_014760|OH1004|PROTEIN

MGRPPCCDKVGVKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIVHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKIKNLQMSTSDTTTCIDVSISKLSSGKTHQNTMVTTTKNPHQCPNMYASSTQNISRLLEGWMRSSSSNNLEEKLAKQENGKELCFNGLVESVDFEFESDLSFDNGCWDKMMNVDYYQKGGDSNEDKGACIFNERKYQKQESLSKPP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014760`
TK1151 ID	TkA02G399360
OH-1004 ID	LXL04_014760
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_014760

Location Chr03:56432170-56433588 (+)

Description Similar to MYB60: Transcription factor MYB60

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08810`	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light).	A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance.2005 · DOI: 10.1016/j.cub.2005.05.048 A dual role for MYB60 in stomatal regulation and root growth of Arabidopsis thaliana under drought stress.2011 · DOI: 10.1007/s11103-011-9796-7
`At5g62470`	Transcription activator involved in the activation of cuticular wax biosynthesis under drought stress.	The MYB96 transcription factor mediates abscisic acid signaling during drought stress response in Arabidopsis.2009 · DOI: 10.1104/pp.109.144220 MYB96-mediated abscisic acid signals induce pathogen resistance response by promoting salicylic acid biosynthesis in Arabidopsis.2010 · DOI: 10.1111/j.1469-8137.2010.03183.x The MYB96 transcription factor regulates cuticular wax biosynthesis under drought conditions in Arabidopsis.2011 · DOI: 10.1105/tpc.111.083485 Lipid transfer protein 3 as a target of MYB96 mediates freezing and drought stress in Arabidopsis.2013 · DOI: 10.1093/jxb/ert040 The Arabidopsis MYB96 transcription factor plays a role in seed dormancy.2015 · DOI: 10.1007/s11103-015-0283-4 The Arabidopsis MYB96 Transcription Factor Is a Positive Regulator of ABSCISIC ACID-INSENSITIVE4 in the Control of Seed Germination.2015 · DOI: 10.1104/pp.15.00162 The MYB96-HHP module integrates cold and abscisic acid signaling to activate the CBF-COR pathway in Arabidopsis.2015 · DOI: 10.1111/tpj.12866 MYB96 shapes the circadian gating of ABA signaling in Arabidopsis.2016 · DOI: 10.1038/srep17754 MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.2016 · DOI: 10.1093/pcp/pcw147 MYB96 recruits the HDA15 protein to suppress negative regulators of ABA signaling in Arabidopsis.2019 · DOI: 10.1038/s41467-019-09417-1

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014760 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0009409 response to cold Biological Process

GO:0009411 response to UV Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0009637 response to blue light Biological Process

GO:0009646 response to absence of light Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009733 response to auxin Biological Process

GO:0009737 response to abscisic acid Biological Process

KEGG gene cross-reference

ath:AT1G08810

ath:AT5G62470

vvi:100233072

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.952

Rank 1 · LXL04_014760 · OH-1004

Cytoplasm0.110

Rank 2 · LXL04_014760 · OH-1004

Cell membrane0.025

Rank 3 · LXL04_014760 · OH-1004

Plastid0.013

Rank 4 · LXL04_014760 · OH-1004

Endoplasmic reticulum0.012

Rank 5 · LXL04_014760 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249.38Myb_DNA-binding14-61 aa

PF13921.13Myb_DNA-bind_617-75 aa

PF00249.38Myb_DNA-binding67-112 aa

PF13921.13Myb_DNA-bind_671-122 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014760	`PF00249.38`	Myb_DNA-binding	14	61	2.3e-33	114.8
LXL04_014760	`PF13921.13`	Myb_DNA-bind_6	17	75	1.4e-19	70.7
LXL04_014760	`PF00249.38`	Myb_DNA-binding	67	112	2.3e-33	114.8
LXL04_014760	`PF13921.13`	Myb_DNA-bind_6	71	122	1.4e-19	70.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8GYP5`	Arabidopsis thaliana	Transcription factor MYB60	55.789%	Swiss-Prot	strong database homology
`Q24JK1`	Arabidopsis thaliana	Transcription factor MYB96	80.137%	Swiss-Prot	moderate database homology

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