LXL04_014458 | RubberDandelionOmics

Gene overview

LXL04_014458

Reference: OH-1004 Chr: Chr03 Coordinates: 49566020-49567690 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

867 bp · LXL04_014458|LXL04_014458|OH1004|cDNA

ATGATGGCTTCGTCAAGGAAATTGTCTGTTTTGTTCATGTTCATTTCGCTGACGATTTCCTTTCCCGTTTCATCAGCTTTTCCGTCCTTATCATCGATGTGCCTTCGTCAAATTAATCCACTTATCCACGATCTACAGCTCCAGTGCCCTACAACAATCGTATCTTCTTCGCCGATCGAGATGGATGGGGAGACTCTTGACAACCTTTTGACCTCCTCTAACACAAATTCATACACATCCGTTTTATTCTATGCTTCATG...

CDS

Download CDS FASTA

867 bp · LXL04_014458|LXL04_014458|OH1004|CDS

ATGATGGCTTCGTCAAGGAAATTGTCTGTTTTGTTCATGTTCATTTCGCTGACGATTTCCTTTCCCGTTTCATCAGCTTTTCCGTCCTTATCATCGATGTGCCTTCGTCAAATTAATCCACTTATCCACGATCTACAGCTCCAGTGCCCTACAACAATCGTATCTTCTTCGCCGATCGAGATGGATGGGGAGACTCTTGACAACCTTTTGACCTCCTCTAACACAAATTCATACACATCCGTTTTATTCTATGCTTCATG...

Protein

Download Protein FASTA

288 aa · LXL04_014458|LXL04_014458|OH1004|PROTEIN

MMASSRKLSVLFMFISLTISFPVSSAFPSLSSMCLRQINPLIHDLQLQCPTTIVSSSPIEMDGETLDNLLTSSNTNSYTSVLFYASWCPFSMNAQAKFHALASMYPQIKHVKVEQSSAMPSSVFSRNGIHSVPSFLITNRTARVQHHGPKDLQSLLDFYQRTTGLEPIMHLTEDQIESSSEKDIISREPYLIFSLLFVALKALLFLCPEIIPKIIALWTAYIPRLNLSIFGESKQLLTHALHLFDVKSAFKKMKISKNRN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_014458`
TK1151 ID	TkA02G424210
OH-1004 ID	LXL04_014458
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_014458

Location Chr03:49566020-49567690 (+)

Description Similar to APRL5: 5'-adenylylsulfate reductase-like 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03860`	5'-adenylylsulfate reductase-like 5.	No verified direct reference in this release
`At5g18120`	5'-adenylylsulfate reductase-like 7.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0806500`	5'-adenylylsulfate reductase-like 5.	No verified direct reference in this release
`Os12g0541600`	5'-adenylylsulfate reductase-like 6.	No verified direct reference in this release
`Os02g0754900`	5'-adenylylsulfate reductase-like 3.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_014458 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0016020 membrane Cellular Component

GO:0016853 isomerase activity Molecular Function

KEGG gene cross-reference

ath:AT3G03860

ath:AT5G18120

dosa:Os02g0754900

dosa:Os03g0806500

osa:9269513

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.413

Rank 1 · LXL04_014458 · OH-1004

Golgi apparatus0.212

Rank 2 · LXL04_014458 · OH-1004

Nucleus0.160

Rank 3 · LXL04_014458 · OH-1004

Cell membrane0.132

Rank 4 · LXL04_014458 · OH-1004

Lysosome / Vacuole0.130

Rank 5 · LXL04_014458 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27914.1APRL7_C182-254 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_014458	`PF27914.1`	APRL7_C	182	254	7.2e-27	94.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q93YX4`	Arabidopsis thaliana	5'-adenylylsulfate reductase-like 5	41.695%	Swiss-Prot	moderate database homology
`Q84JN1`	Arabidopsis thaliana	5'-adenylylsulfate reductase-like 7	43.411%	Swiss-Prot	moderate database homology
`Q84M47`	Oryza sativa subsp. japonica	5'-adenylylsulfate reductase-like 5	38.132%	Swiss-Prot	moderate database homology
`Q2QP53`	Oryza sativa subsp. japonica	5'-adenylylsulfate reductase-like 6	39.669%	Swiss-Prot	moderate database homology
`Q84P95`	Oryza sativa subsp. japonica	5'-adenylylsulfate reductase-like 3	35.600%	Swiss-Prot	moderate database homology

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