Gene Card
Gene overview
cDNA / CDS / Protein Sequences
804 bp · LXL04_013432|LXL04_013432|OH1004|cDNA
ATGGGTAGAGGAAGAGTAGAGTTGAAGAGGATAGAAAACAAGATCAACAGGCAGGTGACTTTTGCTAAAAGAAGAAACGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAATTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTACCTCCAACATGCTCAAGATGCTTGAACGGTACCAGAAATGCACTTATGGCTCAATGGAAATCGACAGATCAGTCGCCAACGC...
804 bp · LXL04_013432|LXL04_013432|OH1004|CDS
ATGGGTAGAGGAAGAGTAGAGTTGAAGAGGATAGAAAACAAGATCAACAGGCAGGTGACTTTTGCTAAAAGAAGAAACGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAATTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCTGCAGTACCTCCAACATGCTCAAGATGCTTGAACGGTACCAGAAATGCACTTATGGCTCAATGGAAATCGACAGATCAGTCGCCAACGC...
Protein
Download Protein FASTA267 aa · LXL04_013432|LXL04_013432|OH1004|PROTEIN
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALIIFSNRGKLYEFCSTSNMLKMLERYQKCTYGSMEIDRSVANAEQNSYKEYMKLKAKYDSLQQYQRQTYIQDSYLYDNDRQVFGEDLGPLSLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWLEANKALQNKLEEVYAENQAGPSWAAAAGDQNCCSYEQQQHHHQQHPQSQDFFQPLDCNSNLQIGYNEVGPSHLTDSTNGQNLNA...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_013432 |
|---|---|
| TK1151 ID | TkA02G496280 |
| OH-1004 ID | LXL04_013432 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 94.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_013432 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:29621702-29626145 (-) | |||||||||
| Description | Similar to MADS2: Agamous-like MADS-box protein MADS2 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0006357 regulation of transcription by RNA polymerase II Biological Process GO:0009908 flower development Biological Process GO:0030154 cell differentiation Biological Process GO:0045944 positive regulation of transcription by RNA polymerase II Biological Process GO:0048440 carpel development Biological Process GO:0048481 plant ovule development Biological Process GO:0005634 nucleus Cellular Component GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding Molecular Function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding Molecular Function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific Molecular Function GO:0003700 DNA-binding transcription factor activity Molecular Function | |||||||||
| KEGG gene cross-reference | ath:AT3G02310 ath:AT5G15800 vvi:100232867 vvi:100232869 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00319.24SRF-TF10-57 aaPF01486.23K-box85-187 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_013432 | PF00319.24 | SRF-TF | 10 | 57 | 3e-26 | 91.3 |
| LXL04_013432 | PF01486.23 | K-box | 85 | 187 | 2.2e-21 | 76.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.