LXL04_013342 | RubberDandelionOmics

Gene overview

LXL04_013342

Reference: OH-1004 Chr: Chr03 Coordinates: 28155328-28156919 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1148 bp · LXL04_013342|LXL04_013342|OH1004|cDNA

ATGATTTCCTTAAAAGATGTTTATCGTATTGTGGCAGCCATAATTCCATTATATGTCGCCATGATCTTGGCTTACGTTTCTGTAAAATGGTTGAAGCTTTTTACCCAAGACCAATGTGCGGGTATAAACAAATTTGTTGCTAAATTTTCAATTCCTTTGTTATCTTTTCAAGTGATATCCAAAAGTAATCCCTACAAGATGAACCTCAAGCTAATTGGTGCTGATGTTCTTCAAAAAGTCATTGCCTTGATTATGGTTGC...

CDS

Download CDS FASTA

1077 bp · LXL04_013342|LXL04_013342|OH1004|CDS

ATGATTTCCTTAAAAGATGTTTATCGTATTGTGGCAGCCATAATTCCATTATATGTCGCCATGATCTTGGCTTACGTTTCTGTAAAATGGTTGAAGCTTTTTACCCAAGACCAATGTGCGGGTATAAACAAATTTGTTGCTAAATTTTCAATTCCTTTGTTATCTTTTCAAGTGATATCCAAAAGTAATCCCTACAAGATGAACCTCAAGCTAATTGGTGCTGATGTTCTTCAAAAAGTCATTGCCTTGATTATGGTTGC...

Protein

Download Protein FASTA

358 aa · LXL04_013342|LXL04_013342|OH1004|PROTEIN

MISLKDVYRIVAAIIPLYVAMILAYVSVKWLKLFTQDQCAGINKFVAKFSIPLLSFQVISKSNPYKMNLKLIGADVLQKVIALIMVAIFTKVRSNGQLNWIITGISLSTLPNTLILGIPLLKAIYGDEAHVLLAQIVALQSVIWYNLLLFLFELSNASEDHIIQSSEATTTIGNPEVREEAEEKEGTKSRNPGRRRKIIMILLTVGKKLLMNPNFHATVAGLAWASISFGCNVKLPKVVEDSITILSDGGLGMAMFSLGL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_013342`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_013342

Location Chr03:28155328-28156919 (-)

Description Similar to PIN8: Auxin efflux carrier component 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15100`	Acts as a component of the auxin efflux carrier.	No verified direct reference in this release
`At5g16530`	Auxin transporter regulating intracellular auxin homeostasis and metabolism.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0715600`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release
`Os01g0919800`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release
`Os08g0529000`	May act as a component of the auxin efflux carrier.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_013342 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009555 pollen development Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009926 auxin polar transport Biological Process

GO:0010315 auxin export across the plasma membrane Biological Process

GO:0080162 endoplasmic reticulum to cytosol auxin transport Biological Process

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0071944 cell periphery Cellular Component

GO:0010329 auxin efflux transmembrane transporter activity Molecular Function

GO:0042802 identical protein binding Molecular Function

KEGG gene cross-reference

ath:AT5G15100

ath:AT5G16530

dosa:Os01g0715600

dosa:Os01g0919800

dosa:Os08g0529000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.754

Rank 1 · LXL04_013342 · OH-1004

Endoplasmic reticulum0.122

Rank 2 · LXL04_013342 · OH-1004

Lysosome / Vacuole0.066

Rank 3 · LXL04_013342 · OH-1004

Cytoplasm0.059

Rank 4 · LXL04_013342 · OH-1004

Golgi apparatus0.033

Rank 5 · LXL04_013342 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03547.24Mem_trans10-353 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_013342	`PF03547.24`	Mem_trans	10	353	4.3e-87	292.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LFP6`	Arabidopsis thaliana	Auxin efflux carrier component 8	53.100%	Swiss-Prot	strong database homology
`Q9FFD0`	Arabidopsis thaliana	Auxin efflux carrier component 5	42.857%	Swiss-Prot	moderate database homology
`Q0JJV0`	Oryza sativa subsp. japonica	Probable auxin efflux carrier component 8	53.672%	Swiss-Prot	strong database homology
`Q5JLM1`	Oryza sativa subsp. japonica	Probable auxin efflux carrier component 5a	39.889%	Swiss-Prot	moderate database homology
`Q6ZIB5`	Oryza sativa subsp. japonica	Probable auxin efflux carrier component 5c	40.108%	Swiss-Prot	moderate database homology

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