LXL04_012559 | RubberDandelionOmics

Gene overview

LXL04_012559

Reference: OH-1004 Chr: Chr03 Coordinates: 14599429-14600912 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1334 bp · LXL04_012559|LXL04_012559|OH1004|cDNA

ATGAGATTACAAGTTTACAGCATTTCTGAATATATTCAGTCATTCAGTGAACCATCCGGCATGGCAACAACCCTCGCCGATATCCATCCGGATCTCATTCAGACCCACATCTTATCACTTCTCGACGGTCCATCCCTTTGCTCCACCGCAACCGCGTCGCCATATCTACAAACCCTCTGCACCGACGACAACCTCTGGTCCCATATCTGCAATTCCAATTGGCCGTCAATCACCGACCCACGTGTCGATGACATCATCTC...

CDS

Download CDS FASTA

1173 bp · LXL04_012559|LXL04_012559|OH1004|CDS

ATGAGATTACAAGTTTACAGCATTTCTGAATATATTCAGTCATTCAGTGAACCATCCGGCATGGCAACAACCCTCGCCGATATCCATCCGGATCTCATTCAGACCCACATCTTATCACTTCTCGACGGTCCATCCCTTTGCTCCACCGCAACCGCGTCGCCATATCTACAAACCCTCTGCACCGACGACAACCTCTGGTCCCATATCTGCAATTCCAATTGGCCGTCAATCACCGACCCACGTGTCGATGACATCATCTC...

Protein

Download Protein FASTA

390 aa · LXL04_012559|LXL04_012559|OH1004|PROTEIN

MRLQVYSISEYIQSFSEPSGMATTLADIHPDLIQTHILSLLDGPSLCSTATASPYLQTLCTDDNLWSHICNSNWPSITDPRVDDIISTFPAGHRSFFQDSYPALVTDIILKHRRPLDLPSQPCPPQIISAVDIRYQNDVIYSKVDFTDTTDEFLSSDLRIRLGEDPESKSFRSFNLKDDELAGADEATLMSHLEESLSLNWILIDPTQKRAGNISSIKPVGVRQGWMNGDTHLLYATVLPGCDENKMVQCRIQVVVGVDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012559`
TK1151 ID	TkA02G553280
OH-1004 ID	LXL04_012559
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.200
Protein coverage (%)	TK1151 85.194 / OH-1004 95.897 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_012559

Location Chr03:14599429-14600912 (-)

Description Similar to At2g27310: F-box protein At2g27310

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27310`	F-box protein At2g27310.	No verified direct reference in this release
`At3g44326`	F-box protein At3g44326.	No verified direct reference in this release
`At2g36090`	Probable F-box protein At2g36090.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012559 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009620 response to fungus Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0019218 regulation of steroid metabolic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0019005 SCF ubiquitin ligase complex Cellular Component

KEGG gene cross-reference

ath:AT2G27310

ath:AT2G36090

ath:AT3G44326

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.718

Rank 1 · LXL04_012559 · OH-1004

Cytoplasm0.316

Rank 2 · LXL04_012559 · OH-1004

Endoplasmic reticulum0.069

Rank 3 · LXL04_012559 · OH-1004

Cell membrane0.068

Rank 4 · LXL04_012559 · OH-1004

Plastid0.030

Rank 5 · LXL04_012559 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937.13F-box-like30-71 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012559	`PF12937.13`	F-box-like	30	71	7.1e-06	26.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9XIN8`	Arabidopsis thaliana	F-box protein At2g27310	40.193%	Swiss-Prot	moderate database homology
`Q2V3R1`	Arabidopsis thaliana	F-box protein At3g44326	34.921%	Swiss-Prot	moderate database homology
`Q9SIH5`	Arabidopsis thaliana	Probable F-box protein At2g36090	34.951%	Swiss-Prot	moderate database homology

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