LXL04_012406 | RubberDandelionOmics

Gene overview

LXL04_012406

Reference: OH-1004 Chr: Chr03 Coordinates: 11690763-11698617 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1704 bp · LXL04_012406|LXL04_012406|OH1004|cDNA

ATGTCATTTCAAGTGGAGGAGACCCAGCAAAACAAAAGAGTTGGAGGTGACAAAGAAATGGAGTGGGTTCGTGATTCATCTTTGGATCATAAAGGGAGACTTCCTCTTCGATCCTCCACAGGAACTTGGAGAGCCTCATTCTTCATCATCGCGATCGAGTTCACTGAAAGACTTAGCTACTTTGCCATAGCAACAAATCTCATCACCTACCTCACAAAAGTGATGCATCAAGACCTCACAACTGCTGCCAAAAATGTCAA...

CDS

Download CDS FASTA

1704 bp · LXL04_012406|LXL04_012406|OH1004|CDS

ATGTCATTTCAAGTGGAGGAGACCCAGCAAAACAAAAGAGTTGGAGGTGACAAAGAAATGGAGTGGGTTCGTGATTCATCTTTGGATCATAAAGGGAGACTTCCTCTTCGATCCTCCACAGGAACTTGGAGAGCCTCATTCTTCATCATCGCGATCGAGTTCACTGAAAGACTTAGCTACTTTGCCATAGCAACAAATCTCATCACCTACCTCACAAAAGTGATGCATCAAGACCTCACAACTGCTGCCAAAAATGTCAA...

Protein

Download Protein FASTA

567 aa · LXL04_012406|LXL04_012406|OH1004|PROTEIN

MSFQVEETQQNKRVGGDKEMEWVRDSSLDHKGRLPLRSSTGTWRASFFIIAIEFTERLSYFAIATNLITYLTKVMHQDLTTAAKNVNNWAGVTTITPLLGAFIADAYTGRFLMILLSSSIYLMGLGILTMSEFIPSIKPSKGKVHELVFFTGIYLLSLGSGGIKPSLESFGADQFDDDNLKERKGKMSFFNWWNTALCSGLLLAVTVLVYLQDNVNWGFANIVLTVTMAITIIIFYFGRKFYRYRVPKGSPFTPILQVLV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_012406`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_012406

Location Chr03:11690763-11698617 (+)

Description Similar to NPF5.6: Protein NRT1/ PTR FAMILY 5.6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g37900`	Protein NRT1/ PTR FAMILY 5.6.	No verified direct reference in this release
`At3g53960`	Protein NRT1/ PTR FAMILY 5.7.	No verified direct reference in this release
`At3g54140`	Peptide transporter.	AtPTR1, a plasma membrane peptide transporter expressed during seed germination and in vascular tissue of Arabidopsis.2004 · DOI: 10.1111/j.1365-313x.2004.02224.x AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At5g01180`	Peptide transporter.	AtPTR1 and AtPTR5 transport dipeptides in planta.2008 · DOI: 10.1104/pp.108.123844
`At1g62200`	Protein NRT1/ PTR FAMILY 8.5.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012406 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0015031 protein transport Biological Process

GO:0042938 dipeptide transport Biological Process

GO:0042939 tripeptide transport Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT1G62200

ath:AT2G37900

ath:AT3G53960

ath:AT3G54140

ath:AT5G01180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.798

Rank 1 · LXL04_012406 · OH-1004

Endoplasmic reticulum0.080

Rank 2 · LXL04_012406 · OH-1004

Cytoplasm0.068

Rank 3 · LXL04_012406 · OH-1004

Lysosome / Vacuole0.054

Rank 4 · LXL04_012406 · OH-1004

Mitochondrion0.028

Rank 5 · LXL04_012406 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07690.22MFS_160-504 aa

PF00854.28PTR2112-516 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_012406	`PF07690.22`	MFS_1	60	504	6.1e-11	42.6
LXL04_012406	`PF00854.28`	PTR2	112	516	8.9e-87	292.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0CI03`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.6	57.812%	Swiss-Prot	strong database homology
`Q9M331`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 5.7	56.738%	Swiss-Prot	strong database homology
`Q9M390`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.1	41.071%	Swiss-Prot	moderate database homology
`Q9LFB8`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.2	42.246%	Swiss-Prot	moderate database homology
`Q93Z20`	Arabidopsis thaliana	Protein NRT1/ PTR FAMILY 8.5	40.206%	Swiss-Prot	moderate database homology

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