LXL04_011751 | RubberDandelionOmics

Gene overview

LXL04_011751

Reference: OH-1004 Chr: Chr02 Coordinates: 170915688-170917762 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

567 bp · LXL04_011751|LXL04_011751|OH1004|cDNA

ATGCTTCGGTATAAAAGAAACCGATGTGCATATGAACAGATGATCTTATCGGAACACATTCCAATTACAGCATCTCGCAGCCTACTACCGAAGATCAAAGAAGGGGGAAAACGCTATCAAATCCATAAAATGGCTGAAAATAAAGAGATTCCGTCTCAATACGATCTGAATGCTAAGTGGGATGCCTGTCTAGATTTGGGCGTTCGTCGTTTCGTATACTCCTCCGCCACCGGTGCTTTCGTCGGCCTTCTGTTGTTCCG...

CDS

Download CDS FASTA

567 bp · LXL04_011751|LXL04_011751|OH1004|CDS

ATGCTTCGGTATAAAAGAAACCGATGTGCATATGAACAGATGATCTTATCGGAACACATTCCAATTACAGCATCTCGCAGCCTACTACCGAAGATCAAAGAAGGGGGAAAACGCTATCAAATCCATAAAATGGCTGAAAATAAAGAGATTCCGTCTCAATACGATCTGAATGCTAAGTGGGATGCCTGTCTAGATTTGGGCGTTCGTCGTTTCGTATACTCCTCCGCCACCGGTGCTTTCGTCGGCCTTCTGTTGTTCCG...

Protein

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188 aa · LXL04_011751|LXL04_011751|OH1004|PROTEIN

MLRYKRNRCAYEQMILSEHIPITASRSLLPKIKEGGKRYQIHKMAENKEIPSQYDLNAKWDACLDLGVRRFVYSSATGAFVGLLLFRSPVTRWASIAFGAGIGIGSAYSDCSQKFDISNSTSPTIVKVEARLYRCLFSSRIPTAWCSGASEKTHSLKLAFPRIMAPDSQIGETKFLLGQLVEERDAKG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011751`
TK1151 ID	TkA03G617330
OH-1004 ID	LXL04_011751
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.600
Protein coverage (%)	TK1151 100.000 / OH-1004 77.128 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011751

Location Chr02:170915688-170917762 (-)

Description Protein of unknown function

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22520`	Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011751 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0061617 MICOS complex Cellular Component

GO:0098800 inner mitochondrial membrane protein complex Cellular Component

KEGG gene cross-reference

ath:AT1G22520

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.668

Rank 1 · LXL04_011751 · OH-1004

Cytoplasm0.161

Rank 2 · LXL04_011751 · OH-1004

Plastid0.118

Rank 3 · LXL04_011751 · OH-1004

Nucleus0.083

Rank 4 · LXL04_011751 · OH-1004

Peroxisome0.058

Rank 5 · LXL04_011751 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF04418.18DUF54346-116 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011751	`PF04418.18`	DUF543	46	116	2.6e-23	82.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LAJ9`	Arabidopsis thaliana	MICOS complex subunit MIC10	72.289%	Swiss-Prot	weak database homology

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