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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_011685
Reference: OH-1004 Chr: Chr02 Coordinates: 169317541-169323144 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1747 bp · LXL04_011685|LXL04_011685|OH1004|cDNA

GGACTCATTTTAGTCACCCATGGCCACTCGAACCGCTGCAATGCTCGAGACATCCTGCGGCTATCTTCTTCAAGAACTACAGATGATTTGGGAGGAAATTGGCGAAAATCAACTCGAAAGAGAAAAAGTTCTGGTTGATCTCGAGCATGAATGTCTTCAGGTGTACCGGAAGAAAGTCGACAATGCAAACATGTCGAGGGCGCGATTACATCAAGAGTTGGCAGATTCGGAAGCTCAATTTACTCATTTGATTTTGTCAC...

CDS

Download CDS FASTA

1728 bp · LXL04_011685|LXL04_011685|OH1004|CDS

ATGGCCACTCGAACCGCTGCAATGCTCGAGACATCCTGCGGCTATCTTCTTCAAGAACTACAGATGATTTGGGAGGAAATTGGCGAAAATCAACTCGAAAGAGAAAAAGTTCTGGTTGATCTCGAGCATGAATGTCTTCAGGTGTACCGGAAGAAAGTCGACAATGCAAACATGTCGAGGGCGCGATTACATCAAGAGTTGGCAGATTCGGAAGCTCAATTTACTCATTTGATTTTGTCACTCGATGAACGTTCGCTTCC...

Protein

Download Protein FASTA

575 aa · LXL04_011685|LXL04_011685|OH1004|PROTEIN

MATRTAAMLETSCGYLLQELQMIWEEIGENQLEREKVLVDLEHECLQVYRKKVDNANMSRARLHQELADSEAQFTHLILSLDERSLPTRPEKMSGALKEQLGAIAPALRKLQSRKAERMKQFRAVQSQIQKISAEIAGQSEYDDSLPDIIVNENDLSLKKLEEYQIELQRLHADKSDRLERVKNYISTIQSLSATLGMDSSMIITKVHPSLNDVSGLTKNMSDRILDKLNSTVESLETEKRSRIEKLQNLGSSLKNLWDL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_011685
TK1151 IDTkA03G610390
OH-1004 IDLXL04_011685
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_011685
LocationChr02:169317541-169323144 (+)
DescriptionSimilar to MAP65-8: 65-kDa microtubule-associated protein 8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g27920 65-kDa microtubule-associated protein 8. No verified direct reference in this release
At5g55230 Microtubule-associated protein that bundle and stabilize adjacent microtubules (MT) of the cell cortex.
In vivo dynamics and differential microtubule-binding activities of MAP65 proteins.2004 · DOI: 10.1104/pp.104.051623
Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456
Dynamic interaction of NtMAP65-1a with microtubules in vivo.2005 · DOI: 10.1242/jcs.02433
Modulated targeting of GFP-AtMAP65-1 to central spindle microtubules during division.2005 · DOI: 10.1111/j.1365-313x.2005.02464.x
Control of the AtMAP65-1 interaction with microtubules through the cell cycle.2006 · DOI: 10.1242/jcs.03051
AtMAP65-1 binds to tubulin dimers to promote tubulin assembly.2007 · DOI: 10.5483/bmbrep.2007.40.2.218
Two microtubule-associated proteins of Arabidopsis MAP65s promote antiparallel microtubule bundling.2008 · DOI: 10.1091/mbc.e08-04-0341
Arabidopsis homologs of nucleus- and phragmoplast-localized kinase 2 and 3 and mitogen-activated protein kinase 4 are essential for microtubule organization.2010 · DOI: 10.1105/tpc.109.071746
At4g26760 Microtubule-associated protein that stabilize microtubules (MT).
Arabidopsis microtubule-associated protein AtMAP65-2 acts as a microtubule stabilizer.2009 · DOI: 10.1007/s11103-008-9426-1
At2g01910 Microtubule-associated protein that mediates the formation of a mesh-like stable and dense network formed by individual microtubules (MT).
Two microtubule-associated proteins of the Arabidopsis MAP65 family function differently on microtubules.2005 · DOI: 10.1104/pp.104.052456
At1g14690 65-kDa microtubule-associated protein 7. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011685 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0001578 microtubule bundle formation Biological Process
GO:0007020 microtubule nucleation Biological Process
GO:0031116 positive regulation of microtubule polymerization Biological Process
GO:0043622 cortical microtubule organization Biological Process
GO:0046785 microtubule polymerization Biological Process
GO:0048528 post-embryonic root development Biological Process
GO:0051301 cell division Biological Process
GO:0000922 spindle pole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT1G14690
ath:AT1G27920
ath:AT2G01910
ath:AT4G26760
ath:AT5G55230
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.714
Rank 1 · LXL04_011685 · OH-1004
Nucleus0.279
Rank 2 · LXL04_011685 · OH-1004
Cell membrane0.059
Rank 3 · LXL04_011685 · OH-1004
Mitochondrion0.055
Rank 4 · LXL04_011685 · OH-1004
Golgi apparatus0.045
Rank 5 · LXL04_011685 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03999.18MAP65_ASE116-487 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_011685PF03999.18MAP65_ASE1164872.4e-74251.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C7G0Arabidopsis thaliana65-kDa microtubule-associated protein 858.755%Swiss-Protstrong database homology
Q9FLP0Arabidopsis thaliana65-kDa microtubule-associated protein 147.349%Swiss-Protmoderate database homology
Q8LEG3Arabidopsis thaliana65-kDa microtubule-associated protein 246.154%Swiss-Protmoderate database homology
Q9SIS3Arabidopsis thaliana65-kDa microtubule-associated protein 642.799%Swiss-Protmoderate database homology
Q8L836Arabidopsis thaliana65-kDa microtubule-associated protein 742.715%Swiss-Protmoderate database homology

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