LXL04_011549 | RubberDandelionOmics

Gene overview

LXL04_011549

Reference: OH-1004 Chr: Chr02 Coordinates: 167131564-167135231 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1494 bp · LXL04_011549|LXL04_011549|OH1004|cDNA

ATGCCGGCTCATAAGTCGAAATCGGAGAAGAATGATCCAGAAAAACATTCACTGAGAGACCCCTACGATGTCCTCAGTGTTTCTCGCAACTCCACAGATCAAGAAATCAAAAGTGCTTATCGTAAATTGGCTTTGAAGTACCATCCTGACAAGAACGCAAATGACCCTAAAGCGACTGATATGTTCAATGAGATAACCTTCTCCTACAACATATTATCGGATCCTGATAAACGTCATCAATACGACACTGCTGGTTTTGA...

CDS

Download CDS FASTA

1494 bp · LXL04_011549|LXL04_011549|OH1004|CDS

ATGCCGGCTCATAAGTCGAAATCGGAGAAGAATGATCCAGAAAAACATTCACTGAGAGACCCCTACGATGTCCTCAGTGTTTCTCGCAACTCCACAGATCAAGAAATCAAAAGTGCTTATCGTAAATTGGCTTTGAAGTACCATCCTGACAAGAACGCAAATGACCCTAAAGCGACTGATATGTTCAATGAGATAACCTTCTCCTACAACATATTATCGGATCCTGATAAACGTCATCAATACGACACTGCTGGTTTTGA...

Protein

Download Protein FASTA

497 aa · LXL04_011549|LXL04_011549|OH1004|PROTEIN

MPAHKSKSEKNDPEKHSLRDPYDVLSVSRNSTDQEIKSAYRKLALKYHPDKNANDPKATDMFNEITFSYNILSDPDKRHQYDTAGFEAVDSKSQDLELDLSSLGAVNTMFAALFSKLGVPIKTTVSATLLEEALNGTVTTQPIELGQPIVRKILPDEKLPDGGVLLNPESSGVFFGGVLHIIVPESRSDGPPGDGLDFVRSDLWNRSSLQLIWGLVKESPSELDEAFSKVEVEKQCAHFYSVTITEKQAQAGLVCRVQSS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011549`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011549

Location Chr02:167131564-167135231 (+)

Description Similar to ATJ16: Chaperone protein dnaJ 16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g24120`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g59980`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release
`At1g68370`	Plays a continuous role in plant development probably in the structural organization of compartments (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011549 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009958 positive gravitropism Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0008092 cytoskeletal protein binding Molecular Function

KEGG gene cross-reference

ath:AT1G24120

ath:AT1G59980

ath:AT1G68370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513

Rank 1 · LXL04_011549 · OH-1004

Nucleus0.275

Rank 2 · LXL04_011549 · OH-1004

Cell membrane0.158

Rank 3 · LXL04_011549 · OH-1004

Endoplasmic reticulum0.152

Rank 4 · LXL04_011549 · OH-1004

Golgi apparatus0.151

Rank 5 · LXL04_011549 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00226.37DnaJ20-82 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011549	`PF00226.37`	DnaJ	20	82	6.4e-26	91.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VXV4`	Arabidopsis thaliana	Chaperone protein dnaJ 16	61.258%	Swiss-Prot	moderate database homology
`Q6XL73`	Arabidopsis thaliana	Chaperone protein dnaJ 39	57.143%	Swiss-Prot	moderate database homology
`Q9ZSY2`	Arabidopsis thaliana	Chaperone protein dnaJ 15	53.030%	Swiss-Prot	moderate database homology

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