Gene Card
Gene overview
cDNA / CDS / Protein Sequences
996 bp · LXL04_011505|LXL04_011505|OH1004|cDNA
ATGGGTGTCGATTACTACAACATACTCAAAGTCAATCGCACGGTTAGcgatgaagatttgaagaaagCATACAAGAAATTGGCCATGAAATGGCATCCTGACAAGAACATTGCTTCCACTGATGATAAAGTAGCTGAATCCAAGTTTAAGCAGATATCGGAGGCGTATTATGTCCTCAGCGACCCTAAAAAGCGCCAGATCTATGATTCATACGGGGAGGAAGGTCTCAAATCAGGCCAATTTGATGAATCGTCTCCTAC...
996 bp · LXL04_011505|LXL04_011505|OH1004|CDS
ATGGGTGTCGATTACTACAACATACTCAAAGTCAATCGCACGGTTAGCGATGAAGATTTGAAGAAAGCATACAAGAAATTGGCCATGAAATGGCATCCTGACAAGAACATTGCTTCCACTGATGATAAAGTAGCTGAATCCAAGTTTAAGCAGATATCGGAGGCGTATTATGTCCTCAGCGACCCTAAAAAGCGCCAGATCTATGATTCATACGGGGAGGAAGGTCTCAAATCAGGCCAATTTGATGAATCGTCTCCTAC...
Protein
Download Protein FASTA331 aa · LXL04_011505|LXL04_011505|OH1004|PROTEIN
MGVDYYNILKVNRTVSDEDLKKAYKKLAMKWHPDKNIASTDDKVAESKFKQISEAYYVLSDPKKRQIYDSYGEEGLKSGQFDESSPTYKGTTKSTSRFRFDPRDADEIFAEFFYGSDGGGGGGGGRKKGNPGGVLKNSNQKSVRKAETVENKLSCSLEELYKGSKRKMQISRIVLDDSGKPGTLEEILPIHIKPGWKKGTKITFPEKGNQEPGAAPGDLIFVVDEKPHDTFKRDGNDLVFTKRITLLEALTGKTIKVVTL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011505 |
|---|---|
| TK1151 ID | TkA03G594360 |
| OH-1004 ID | LXL04_011505 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 91.336 / OH-1004 76.435Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011505 |
|---|---|
| Location | Chr02:165777448-165778636 (-) |
| Description | Similar to Dnajb4: DnaJ homolog subfamily B member 4 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process GO:0006457 protein folding Biological Process GO:0006986 response to unfolded protein Biological Process GO:0009408 response to heat Biological Process GO:0034605 cellular response to heat Biological Process GO:0050821 protein stabilization Biological Process GO:0090084 negative regulation of inclusion body assembly Biological Process GO:1903334 positive regulation of protein folding Biological Process GO:0005654 nucleoplasm Cellular Component GO:0005730 nucleolus Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component |
| KEGG gene cross-reference | bta:538426 bta:541274 dme:Dmel_CG10578 mmu:67035 pon:100174554 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00226.37DnaJ4-69 aaPF01556.24DnaJ_C150-307 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_011505 | PF00226.37 | DnaJ | 4 | 69 | 6.3e-25 | 87.8 |
| LXL04_011505 | PF01556.24 | DnaJ_C | 150 | 307 | 3.2e-41 | 141.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.