Gene Card
Gene overview
cDNA / CDS / Protein Sequences
390 bp · LXL04_011421|LXL04_011421|OH1004|cDNA
ATGGACTCATTTACGGGAAGCATCAAAAGCGCCGTCGCCGGCAGCCAGACCGAGGGCGACACCAAAAGTACCAACACAGAGCAAGCATCCTCGACGGAGCTCTTGTCGAGTGCCAAGCAGGTGGCGGAGGCCGCTAAACTTGCTGCAAGCAACCAAACAGAGAAAATTGACAAGGCTAAGACCGCCGGCGCCGGCGCCGACGTCCTTGACGCCTCCCAGAAGTACGGAAAGTTCGATGAGACGCAAGGTGTGGGGCAGTA...
390 bp · LXL04_011421|LXL04_011421|OH1004|CDS
ATGGACTCATTTACGGGAAGCATCAAAAGCGCCGTCGCCGGCAGCCAGACCGAGGGCGACACCAAAAGTACCAACACAGAGCAAGCATCCTCGACGGAGCTCTTGTCGAGTGCCAAGCAGGTGGCGGAGGCCGCTAAACTTGCTGCAAGCAACCAAACAGAGAAAATTGACAAGGCTAAGACCGCCGGCGCCGGCGCCGACGTCCTTGACGCCTCCCAGAAGTACGGAAAGTTCGATGAGACGCAAGGTGTGGGGCAGTA...
Protein
Download Protein FASTA129 aa · LXL04_011421|LXL04_011421|OH1004|PROTEIN
MDSFTGSIKSAVAGSQTEGDTKSTNTEQASSTELLSSAKQVAEAAKLAASNQTEKIDKAKTAGAGADVLDASQKYGKFDETQGVGQYLKKADDYLHEYEKSGATATTPPPVKEGEAAPPPPAEEKKEES
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_011421 |
|---|---|
| TK1151 ID | TkA03G586780 |
| OH-1004 ID | LXL04_011421 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 84.800 / OH-1004 82.171Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_011421 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr02:164016405-164016794 (-) | |||||||||
| Description | Similar to NRP1: Nodulin-related protein 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0006952 defense response Biological Process GO:0009408 response to heat Biological Process GO:0009409 response to cold Biological Process GO:0009617 response to bacterium Biological Process GO:0009651 response to salt stress Biological Process GO:0009738 abscisic acid-activated signaling pathway Biological Process GO:0010115 regulation of abscisic acid biosynthetic process Biological Process GO:1900426 positive regulation of defense response to bacterium Biological Process GO:0005576 extracellular region Cellular Component GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G13930 ath:AT2G03440 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
No result was found for this query.
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.