LXL04_011192 | RubberDandelionOmics

Gene overview

LXL04_011192

Reference: OH-1004 Chr: Chr02 Coordinates: 159739577-159741465 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

894 bp · LXL04_011192|LXL04_011192|OH1004|cDNA

ATGCACGATTTCTGCTTCACAATCCCGTACGGGATGATAGTCTTCTGCGGTGGAATTATCGGCTTTGCGAGAAAAGGTAGCAAAACAAGATTCTTTAAGTTTCGTGAAATAGAACTTCACGATGATTTACATACTACTGTACCTTATGCAATAGCTGATAGTCATCCATCAGAAGCCCAAAGGATATCAATCGAGAAGAGCAAGTATCTTGGAGGTGATGTTGAACACACACATTTGGTTAAAGGATTAGACTATGCTTT...

CDS

Download CDS FASTA

894 bp · LXL04_011192|LXL04_011192|OH1004|CDS

ATGCACGATTTCTGCTTCACAATCCCGTACGGGATGATAGTCTTCTGCGGTGGAATTATCGGCTTTGCGAGAAAAGGTAGCAAAACAAGATTCTTTAAGTTTCGTGAAATAGAACTTCACGATGATTTACATACTACTGTACCTTATGCAATAGCTGATAGTCATCCATCAGAAGCCCAAAGGATATCAATCGAGAAGAGCAAGTATCTTGGAGGTGATGTTGAACACACACATTTGGTTAAAGGATTAGACTATGCTTT...

Protein

Download Protein FASTA

297 aa · LXL04_011192|LXL04_011192|OH1004|PROTEIN

MHDFCFTIPYGMIVFCGGIIGFARKGSKTRFFKFREIELHDDLHTTVPYAIADSHPSEAQRISIEKSKYLGGDVEHTHLVKGLDYALLNKVRSEIDKKPKDEDADDGKPRYTCMDLELFIHDDRRVDFLMISQPLSTEAKLTAQSQRKWLRSVLTALYLTESVKSCLTFASDHLGSSGKILKKKKKDKDAKGKLSSNYDVEKISKPEREFLPPPPPPPPRRIHSEETEKVEPVVEPIVEPTVARVEEDDIFVVFAAASRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011192`
TK1151 ID	TkA07G437570
OH-1004 ID	LXL04_011192
Relationship / confidence	Multi Candidate From Tk1151 / Complex relationship
Protein identity (%)	62.500
Protein coverage (%)	TK1151 100.000 / OH-1004 56.566 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011192

Location Chr02:159739577-159741465 (-)

Description Similar to SMU2: Suppressor of mec-8 and unc-52 protein homolog 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g26460`	Auxiliary spliceosomal protein involved in splicing of specific pre-mRNAs that affect multiple aspects of development.	Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development.2009 · DOI: 10.1104/pp.109.141705

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011192 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000278 mitotic cell cycle Biological Process

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0007094 mitotic spindle assembly checkpoint signaling Biological Process

GO:0008380 RNA splicing Biological Process

GO:0034501 protein localization to kinetochore Biological Process

GO:0000228 nuclear chromosome Cellular Component

GO:0000922 spindle pole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005694 chromosome Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0071005 U2-type precatalytic spliceosome Cellular Component

KEGG gene cross-reference

ath:AT2G26460

hsa:3550

mmu:24010

pon:100173452

rno:291659

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.773

Rank 1 · LXL04_011192 · OH-1004

Cytoplasm0.286

Rank 2 · LXL04_011192 · OH-1004

Mitochondrion0.039

Rank 3 · LXL04_011192 · OH-1004

Cell membrane0.031

Rank 4 · LXL04_011192 · OH-1004

Endoplasmic reticulum0.029

Rank 5 · LXL04_011192 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07808.19RED_N41-106 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011192	`PF07808.19`	RED_N	41	106	1.2e-23	84.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O48713`	Arabidopsis thaliana	Suppressor of mec-8 and unc-52 protein homolog 2	45.185%	Swiss-Prot	weak database homology

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