LXL04_010909 | RubberDandelionOmics

Gene overview

LXL04_010909

Reference: OH-1004 Chr: Chr02 Coordinates: 155077373-155080581 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1101 bp · LXL04_010909|LXL04_010909|OH1004|cDNA

ATGTCTACGACGAATAAAAAACCAGCTTGCGACAATGTATCAGGCGCGAAACAAAAGCTGGCAGAATTTATCTCTGAATCTGGTAACATGTGCTGTGCAGATTGTGGAAATCCAGATCCAAAATGGGTATGTGTAAGTTTTGGAGCATTTATCTGCATCAAGTGTTCAGGAGCACATAGAAGTCTAGGAGTTCATATATCAAAAATTTTATCAGTAAACCTAGACGAATGGACACACGAAGAAGTCAACATTGTAATAAA...

CDS

Download CDS FASTA

1101 bp · LXL04_010909|LXL04_010909|OH1004|CDS

ATGTCTACGACGAATAAAAAACCAGCTTGCGACAATGTATCAGGCGCGAAACAAAAGCTGGCAGAATTTATCTCTGAATCTGGTAACATGTGCTGTGCAGATTGTGGAAATCCAGATCCAAAATGGGTATGTGTAAGTTTTGGAGCATTTATCTGCATCAAGTGTTCAGGAGCACATAGAAGTCTAGGAGTTCATATATCAAAAATTTTATCAGTAAACCTAGACGAATGGACACACGAAGAAGTCAACATTGTAATAAA...

Protein

Download Protein FASTA

366 aa · LXL04_010909|LXL04_010909|OH1004|PROTEIN

MSTTNKKPACDNVSGAKQKLAEFISESGNMCCADCGNPDPKWVCVSFGAFICIKCSGAHRSLGVHISKILSVNLDEWTHEEVNIVIKCGGNAMVNSKLEASIPDTCKKPKPDSCIEERLEFIRRKYELQQFLNSNKQICERASQPPSSSECASANVGGANLDKKHSNSVLVPSISHAFRNSWKKKDNEHNKAPPPKTSNSMAGMIEFIGLIKVNVVKGINLAVRDMMTSDPYVLLSLGNQSVKTRVIKSNLNPVWNEKLM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010909`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_010909

Location Chr02:155077373-155080581 (+)

Description Similar to AGD11: Probable ADP-ribosylation factor GTPase-activating protein AGD11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g07940`	GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).	No verified direct reference in this release
`At4g21160`	GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).	No verified direct reference in this release
`At4g05330`	GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0327000`	Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity).	Constitutive expression of a rice GTPase-activating protein induces defense responses.2008 · DOI: 10.1111/j.1469-8137.2008.02473.x An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.2010 · DOI: 10.1074/jbc.m110.172080 Site-directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 for the Physiological Functions of the Rice GTPase-activating Protein 1 (OsGAP1).2015 · DOI: 10.1074/jbc.m115.655639
`UniProt: A2X479`	Mediates the transient calcium-dependent interaction of PYR/PYL/RCAR abscisic acid (ABA) receptors with the plasma membrane and thus regulates ABA sensitivity (By similarity).	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010909 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006886 intracellular protein transport Biological Process

GO:0006952 defense response Biological Process

GO:0009555 pollen development Biological Process

GO:0009611 response to wounding Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0043547 positive regulation of GTPase activity Biological Process

GO:1900426 positive regulation of defense response to bacterium Biological Process

GO:1901002 positive regulation of response to salt stress Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT3G07940

ath:AT4G05330

ath:AT4G21160

dosa:Os02g0327000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.453

Rank 1 · LXL04_010909 · OH-1004

Cell membrane0.340

Rank 2 · LXL04_010909 · OH-1004

Nucleus0.232

Rank 3 · LXL04_010909 · OH-1004

Golgi apparatus0.131

Rank 4 · LXL04_010909 · OH-1004

Lysosome / Vacuole0.090

Rank 5 · LXL04_010909 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01412.24ArfGap18-134 aa

PF00168.37C2210-303 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010909	`PF01412.24`	ArfGap	18	134	2e-34	118.9
LXL04_010909	`PF00168.37`	C2	210	303	5.5e-24	85.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L7A4`	Arabidopsis thaliana	Probable ADP-ribosylation factor GTPase-activating protein AGD11	59.322%	Swiss-Prot	strong database homology
`Q9FVJ3`	Arabidopsis thaliana	ADP-ribosylation factor GTPase-activating protein AGD12	46.591%	Swiss-Prot	moderate database homology
`Q8LFN9`	Arabidopsis thaliana	Probable ADP-ribosylation factor GTPase-activating protein AGD13	45.299%	Swiss-Prot	moderate database homology
`Q6YWF1`	Oryza sativa subsp. japonica	GTPase activating protein 1	44.937%	Swiss-Prot	weak database homology
`A2X479`	Oryza sativa subsp. indica	GTPase activating protein 1	44.937%	Swiss-Prot	weak database homology

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