LXL04_010833 | RubberDandelionOmics

Gene overview

LXL04_010833

Reference: OH-1004 Chr: Chr02 Coordinates: 154172746-154173684 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

939 bp · LXL04_010833|LXL04_010833|OH1004|cDNA

ATGTCGTTCTTTACTTATCTACGACACGCTATTCTTTGCATAATCGCCATTCTTAAACCGTCTGTCTCACTCAATCTCTCCATCATCTCCTTCACCGAAGCTTTCTCCCCACTTTACGGAAACCAAAACGTCATACCTTCCAACGATGGAAACTCCGTTCAAATCTCCATGAATCAATGGTTGACTTCAGGATCAGGTTTCGTTTCCCAATACGCATACAATCACGGTTTCTTCATCGCCTCCATCAAGCTCCCAAACAA...

CDS

Download CDS FASTA

939 bp · LXL04_010833|LXL04_010833|OH1004|CDS

ATGTCGTTCTTTACTTATCTACGACACGCTATTCTTTGCATAATCGCCATTCTTAAACCGTCTGTCTCACTCAATCTCTCCATCATCTCCTTCACCGAAGCTTTCTCCCCACTTTACGGAAACCAAAACGTCATACCTTCCAACGATGGAAACTCCGTTCAAATCTCCATGAATCAATGGTTGACTTCAGGATCAGGTTTCGTTTCCCAATACGCATACAATCACGGTTTCTTCATCGCCTCCATCAAGCTCCCAAACAA...

Protein

Download Protein FASTA

312 aa · LXL04_010833|LXL04_010833|OH1004|PROTEIN

MSFFTYLRHAILCIIAILKPSVSLNLSIISFTEAFSPLYGNQNVIPSNDGNSVQISMNQWLTSGSGFVSQYAYNHGFFIASIKLPNNTYTAGVVATFYAQNNDSNRDEIDFEFLGHIEGEGWILQTNLYGNGSIHKGREERYRLPFDPSKDFHDYGILWTTNRVIFFVDECAIREVVNVKEMGGDFPSKPMYMYGTMWDGSDWATHDGKYRVDFEYGGFDTEYTRFVMDGCRVDSFFQPECYADIPSGINATERTRMDVY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010833`
TK1151 ID	TkA03G550980
OH-1004 ID	LXL04_010833
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	96.800
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010833

Location Chr02:154172746-154173684 (-)

Description Similar to XTH30: Probable xyloglucan endotransglucosylase/hydrolase protein 30

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g32170`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At2g01850`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	AtXTH27 plays an essential role in cell wall modification during the development of tracheary elements.2005 · DOI: 10.1111/j.1365-313x.2005.02395.x
`At1g14720`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g18990`	Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release
`At4g13090`	May catalyze xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010833 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010154 fruit development Biological Process

GO:0010411 xyloglucan metabolic process Biological Process

GO:0042546 cell wall biogenesis Biological Process

GO:0071555 cell wall organization Biological Process

GO:0080086 stamen filament development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds Molecular Function

GO:0016762 xyloglucan:xyloglucosyl transferase activity Molecular Function

GO:0030247 polysaccharide binding Molecular Function

KEGG gene cross-reference

ath:AT1G14720

ath:AT1G32170

ath:AT2G01850

ath:AT4G13090

ath:AT4G18990

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.340

Rank 1 · LXL04_010833 · OH-1004

Extracellular0.177

Rank 2 · LXL04_010833 · OH-1004

Endoplasmic reticulum0.156

Rank 3 · LXL04_010833 · OH-1004

Cytoplasm0.132

Rank 4 · LXL04_010833 · OH-1004

Cell membrane0.125

Rank 5 · LXL04_010833 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00722.29Glyco_hydro_1632-215 aa

PF06955.20XET_C247-283 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010833	`PF00722.29`	Glyco_hydro_16	32	215	1.8e-48	165.1
LXL04_010833	`PF06955.20`	XET_C	247	283	1.4e-10	41.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q38908`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 30	47.260%	Swiss-Prot	moderate database homology
`Q8LDS2`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 27	47.987%	Swiss-Prot	moderate database homology
`Q38909`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 28	48.708%	Swiss-Prot	moderate database homology
`Q8L7H3`	Arabidopsis thaliana	Probable xyloglucan endotransglucosylase/hydrolase protein 29	44.561%	Swiss-Prot	moderate database homology
`Q9SV60`	Arabidopsis thaliana	Xyloglucan endotransglucosylase/hydrolase protein 2	37.175%	Swiss-Prot	moderate database homology

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