LXL04_010656 | RubberDandelionOmics

Gene overview

LXL04_010656

Reference: OH-1004 Chr: Chr02 Coordinates: 150875131-150877751 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1290 bp · LXL04_010656|LXL04_010656|OH1004|cDNA

ATGGACCAATCTGAGCGTTACTCCTACAACCCGACGCTGCGCTGGAATCCTCAAGTGGAAGAGTATTTCAGCAAAGCGTATGGAGCTGAAGCTTTTTCTCGCATTTGCAAAGCTCTAACGCGGCCTTCTTGTTACTCTTGTATACGTGTAAATACACAGAGAACAACAACTGAAGCTGTCATTGAGAAGATTCTGGAGATTCAACGTGAGAAGAGGCTTCATGACACTGTAAACAATCAGCATATGAACAATGATGCAAA...

CDS

Download CDS FASTA

1290 bp · LXL04_010656|LXL04_010656|OH1004|CDS

ATGGACCAATCTGAGCGTTACTCCTACAACCCGACGCTGCGCTGGAATCCTCAAGTGGAAGAGTATTTCAGCAAAGCGTATGGAGCTGAAGCTTTTTCTCGCATTTGCAAAGCTCTAACGCGGCCTTCTTGTTACTCTTGTATACGTGTAAATACACAGAGAACAACAACTGAAGCTGTCATTGAGAAGATTCTGGAGATTCAACGTGAGAAGAGGCTTCATGACACTGTAAACAATCAGCATATGAACAATGATGCAAA...

Protein

Download Protein FASTA

429 aa · LXL04_010656|LXL04_010656|OH1004|PROTEIN

MDQSERYSYNPTLRWNPQVEEYFSKAYGAEAFSRICKALTRPSCYSCIRVNTQRTTTEAVIEKILEIQREKRLHDTVNNQHMNNDAKVETLSVDSSRSETSPVLKCQIPGLDYVVFVKGSGPHDIQYDYQQDTPPKEIIVSRKCAEAVLRVSPSDTVLMATKKMLECHISSAIVTVDSKPIGILTSKDILMRVISLGLGPESTIVEKVMTPNPECANIDMPIVDALHTMHHGKFLHLPIVDREGLVVAIIDVLHISHAAV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010656`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010656

Location Chr02:150875131-150877751 (+)

Description Similar to CBSCBSPB5: CBS domain-containing protein CBSCBSPB5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g50640`	CBS domain-containing protein CBSCBSPB5.	No verified direct reference in this release
`At5g50530`	CBS domain-containing protein CBSCBSPB4.	No verified direct reference in this release
`At5g63490`	CBS domain-containing protein CBSCBSPB1.	No verified direct reference in this release
`At3g52950`	CBS domain-containing protein CBSCBSPB3.	No verified direct reference in this release
`At2g36500`	CBS domain-containing protein CBSCBSPB2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010656 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G50530

ath:AT5G50640

ath:AT5G63490

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.566

Rank 1 · LXL04_010656 · OH-1004

Cytoplasm0.461

Rank 2 · LXL04_010656 · OH-1004

Cell membrane0.067

Rank 3 · LXL04_010656 · OH-1004

Endoplasmic reticulum0.046

Rank 4 · LXL04_010656 · OH-1004

Mitochondrion0.045

Rank 5 · LXL04_010656 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00571.34CBS148-193 aa

PF00571.34CBS205-256 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010656	`PF00571.34`	CBS	148	193	2.1e-14	54.3
LXL04_010656	`PF00571.34`	CBS	205	256	2.1e-14	54.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P0DH79`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB5	63.111%	Swiss-Prot	moderate database homology
`Q0WLC7`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB4	63.111%	Swiss-Prot	moderate database homology
`Q9FMV3`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB1	58.197%	Swiss-Prot	moderate database homology
`Q9LF97`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB3	51.982%	Swiss-Prot	moderate database homology
`Q9SJQ5`	Arabidopsis thaliana	CBS domain-containing protein CBSCBSPB2	51.185%	Swiss-Prot	weak database homology

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