LXL04_010384 | RubberDandelionOmics

Gene overview

LXL04_010384

Reference: OH-1004 Chr: Chr02 Coordinates: 145736636-145739870 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1080 bp · LXL04_010384|LXL04_010384|OH1004|cDNA

ATGCCAACACACATGGCTCATGAGTCGGGCTTATTAGTCTTGGTCCATGTCTTTATAATGATATGGCACTTGGGTACATACATAGTTTCTGGTGAACAAAAAGTGCCATGTTACTTCATCTTTGGAGACTCGTTAGTTGATAATGGCAACAACAATGAACTACATTCAAAATGGAAAGCCAATTACCCACCGTATGGGGTCGATTTTCCAAAAGGTGCCACTGGCAGGTTCTGCAACGGCCGGACAACCGCAGATATTAT...

CDS

Download CDS FASTA

1080 bp · LXL04_010384|LXL04_010384|OH1004|CDS

ATGCCAACACACATGGCTCATGAGTCGGGCTTATTAGTCTTGGTCCATGTCTTTATAATGATATGGCACTTGGGTACATACATAGTTTCTGGTGAACAAAAAGTGCCATGTTACTTCATCTTTGGAGACTCGTTAGTTGATAATGGCAACAACAATGAACTACATTCAAAATGGAAAGCCAATTACCCACCGTATGGGGTCGATTTTCCAAAAGGTGCCACTGGCAGGTTCTGCAACGGCCGGACAACCGCAGATATTAT...

Protein

Download Protein FASTA

359 aa · LXL04_010384|LXL04_010384|OH1004|PROTEIN

MPTHMAHESGLLVLVHVFIMIWHLGTYIVSGEQKVPCYFIFGDSLVDNGNNNELHSKWKANYPPYGVDFPKGATGRFCNGRTTADIIGQFIGLDEFLPSYIKATDEEIIRGVNYASAGCGIREETGSHNGGRFSLDMQLLNHKSIIKRLWRLKHNISIIKECMYVVNIGSNDFINNYFLPEHYNTSRRYNIERYVEVLMKQYSKQLRTLYKMGARKVALFALTQIGCTPFAIKKFETKGKPCANELNKAAMLFNHKFKPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_010384`
TK1151 ID	TkA03G524330
OH-1004 ID	LXL04_010384
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 62.117 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_010384

Location Chr02:145736636-145739870 (-)

Description Similar to At1g29660: GDSL esterase/lipase At1g29660

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g29660`	Involved in EDS1-dependent systemic acquired resistance, maybe in phloem-mediated long-distance signaling.	No verified direct reference in this release
`At1g29670`	GDSL esterase/lipase At1g29670.	No verified direct reference in this release
`At5g45670`	GDSL esterase/lipase At5g45670.	No verified direct reference in this release
`At4g18970`	GDSL esterase/lipase At4g18970.	No verified direct reference in this release
`At2g19010`	GDSL esterase/lipase At2g19010.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_010384 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009627 systemic acquired resistance Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0048046 apoplast Cellular Component

GO:0099503 secretory vesicle Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G29660

ath:AT1G29670

ath:AT4G18970

ath:AT5G45670

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.668

Rank 1 · LXL04_010384 · OH-1004

Cell membrane0.106

Rank 2 · LXL04_010384 · OH-1004

Endoplasmic reticulum0.086

Rank 3 · LXL04_010384 · OH-1004

Cytoplasm0.068

Rank 4 · LXL04_010384 · OH-1004

Lysosome / Vacuole0.061

Rank 5 · LXL04_010384 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657.29Lipase_GDSL38-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_010384	`PF00657.29`	Lipase_GDSL	38	335	5.9e-31	109.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9C7N5`	Arabidopsis thaliana	GDSL esterase/lipase At1g29660	43.137%	Swiss-Prot	moderate database homology
`Q9C7N4`	Arabidopsis thaliana	GDSL esterase/lipase At1g29670	41.011%	Swiss-Prot	moderate database homology
`Q9FK75`	Arabidopsis thaliana	GDSL esterase/lipase At5g45670	39.071%	Swiss-Prot	moderate database homology
`Q93YW8`	Arabidopsis thaliana	GDSL esterase/lipase At4g18970	40.882%	Swiss-Prot	moderate database homology
`O65921`	Arabidopsis thaliana	GDSL esterase/lipase At2g19010	42.296%	Swiss-Prot	moderate database homology

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