LXL04_009402 | RubberDandelionOmics

Gene overview

LXL04_009402

Reference: OH-1004 Chr: Chr02 Coordinates: 125396384-125399918 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1095 bp · LXL04_009402|LXL04_009402|OH1004|cDNA

ATGGATGCTTCTGCAACACCGTCGAAGACCCCTAAAGGGGGCTTCAAGCTCCTCGCTGATCTTCCCTCCAAAGGCCTTTTCTCCTCCACTGTCGTTTCTTCCAATTTGGGTGGAATGAGGGTCTACATGAGTGATCGTGATACATCACCTCCAGAAAACCAGCTAATAAAGACGGATCAAATGAACATACTTATTAGATCTCTTTTAATCAAGCAGCAAAACAAGGCTGAATCAAGCGCAAAAGGTGCAAACAGAAAAGA...

CDS

Download CDS FASTA

1095 bp · LXL04_009402|LXL04_009402|OH1004|CDS

ATGGATGCTTCTGCAACACCGTCGAAGACCCCTAAAGGGGGCTTCAAGCTCCTCGCTGATCTTCCCTCCAAAGGCCTTTTCTCCTCCACTGTCGTTTCTTCCAATTTGGGTGGAATGAGGGTCTACATGAGTGATCGTGATACATCACCTCCAGAAAACCAGCTAATAAAGACGGATCAAATGAACATACTTATTAGATCTCTTTTAATCAAGCAGCAAAACAAGGCTGAATCAAGCGCAAAAGGTGCAAACAGAAAAGA...

Protein

Download Protein FASTA

364 aa · LXL04_009402|LXL04_009402|OH1004|PROTEIN

MDASATPSKTPKGGFKLLADLPSKGLFSSTVVSSNLGGMRVYMSDRDTSPPENQLIKTDQMNILIRSLLIKQQNKAESSAKGANRKEGSRKRATTKRAASNAQNSSHSEGSRSLVPENLQSLTVERIRALLKERGLSLKGRKDELIARLRGVKGTLEYMLVCFTQKWDDHGVASEEHTSFSPAKQAAATMVKYSKEPENPTKSCKARGSDLRCHFKNTRETAHALRKMSLIKAKRYLEDVLVHKQAIPFTRFCRGVGRTA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_009402`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_009402

Location Chr02:125396384-125399918 (+)

Description Similar to RPL17B: 60S ribosomal protein L17-2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g67430`	Large ribosomal subunit protein uL22y.	No verified direct reference in this release
`At1g27400`	Large ribosomal subunit protein uL22z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_009402 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002181 cytoplasmic translation Biological Process

GO:0061484 hematopoietic stem cell homeostasis Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005773 vacuole Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

KEGG gene cross-reference

ath:AT1G27400

ath:AT1G67430

zma:541667

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.475

Rank 1 · LXL04_009402 · OH-1004

Mitochondrion0.409

Rank 2 · LXL04_009402 · OH-1004

Cytoplasm0.159

Rank 3 · LXL04_009402 · OH-1004

Nucleus0.063

Rank 4 · LXL04_009402 · OH-1004

Peroxisome0.029

Rank 5 · LXL04_009402 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10172.15DDA116-69 aa

PF02037.34SAP119-150 aa

PF00237.25Ribosomal_L22206-340 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_009402	`PF10172.15`	DDA1	16	69	7.8e-13	49.1
LXL04_009402	`PF02037.34`	SAP	119	150	4.7e-09	36.4
LXL04_009402	`PF00237.25`	Ribosomal_L22	206	340	3.5e-30	105.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P51413`	Arabidopsis thaliana	Large ribosomal subunit protein uL22y	88.571%	Swiss-Prot	weak database homology
`Q93VI3`	Arabidopsis thaliana	Large ribosomal subunit protein uL22z	88.372%	Swiss-Prot	weak database homology

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