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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_008696
Reference: OH-1004 Chr: Chr02 Coordinates: 106391580-106393682 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2103 bp · LXL04_008696|LXL04_008696|OH1004|cDNA

ATGATCAGGTGTCATGGAATTGTCCTCAAACATAATTGCCTGTCATCCCTGATTTCAAGAAAATCGCTCAACACTCCGAAATGCTACTCCACTTTCCTTCTTCCACAAAATGACTGCACCACAAACAACACGACGACTATTCAAACATTCGCCGATTACGAGCGTGCCCTCGTCCAAGCATTGAAATCATCTTCTTCCCTTTCTGCACCGTTCCATTACGGCCAGCATCTCCATTGTCATATCTTCAAGGGCGGATATGA...

CDS

Download CDS FASTA

2103 bp · LXL04_008696|LXL04_008696|OH1004|CDS

ATGATCAGGTGTCATGGAATTGTCCTCAAACATAATTGCCTGTCATCCCTGATTTCAAGAAAATCGCTCAACACTCCGAAATGCTACTCCACTTTCCTTCTTCCACAAAATGACTGCACCACAAACAACACGACGACTATTCAAACATTCGCCGATTACGAGCGTGCCCTCGTCCAAGCATTGAAATCATCTTCTTCCCTTTCTGCACCGTTCCATTACGGCCAGCATCTCCATTGTCATATCTTCAAGGGCGGATATGA...

Protein

Download Protein FASTA

700 aa · LXL04_008696|LXL04_008696|OH1004|PROTEIN

MIRCHGIVLKHNCLSSLISRKSLNTPKCYSTFLLPQNDCTTNNTTTIQTFADYERALVQALKSSSSLSAPFHYGQHLHCHIFKGGYDSNIFIRNSLINFYAKSGAIHDAESIFVSGFQSDRISSNIMLAGYVNVGRLSDARHLFDKMPGKNSISFTTMIMGLARHGFWVEAIKLFKEMRSLGFVPTEVTMSSVLSSYSHISGIKTAQILHALVAKSGLEDFTLVLTSLVQLYCACSSLIDARILFDGMPERNIVSWNVML...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_008696
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_008696
LocationChr02:106391580-106393682 (-)
DescriptionSimilar to PCMP-E42: Pentatricopeptide repeat-containing protein At5g19020, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g19020 Pentatricopeptide repeat-containing protein At5g19020, mitochondrial. No verified direct reference in this release
At2g22070 Pentatricopeptide repeat-containing protein At2g22070. No verified direct reference in this release
At2g13600 Pentatricopeptide repeat-containing protein At2g13600. No verified direct reference in this release
At3g22690 Pentatricopeptide repeat-containing protein At3g22690. No verified direct reference in this release
At1g08070 Involved in multiple sites RNA editing events in chloroplasts. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008696 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0010182 sugar mediated signaling pathway Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G13600
ath:AT2G22070
ath:AT5G19020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.600
Rank 1 · LXL04_008696 · OH-1004
Plastid0.236
Rank 2 · LXL04_008696 · OH-1004
Nucleus0.047
Rank 3 · LXL04_008696 · OH-1004
Cytoplasm0.035
Rank 4 · LXL04_008696 · OH-1004
Cell membrane0.005
Rank 5 · LXL04_008696 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_2151-197 aa
PF12854.14PPR_1151-179 aa
PF01535.27PPR153-183 aa
PF13041.13PPR_2251-283 aa
PF01535.27PPR254-283 aa
PF13041.13PPR_2282-320 aa
PF12854.14PPR_1385-411 aa
PF13041.13PPR_2386-412 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_008696PF13041.13PPR_21511971.5e-70233.8
LXL04_008696PF12854.14PPR_11511794.6e-44148.5
LXL04_008696PF01535.27PPR1531833.3e-76247.1
LXL04_008696PF13041.13PPR_22512831.5e-70233.8
LXL04_008696PF01535.27PPR2542833.3e-76247.1
LXL04_008696PF13041.13PPR_22823201.5e-70233.8
LXL04_008696PF12854.14PPR_13854114.6e-44148.5
LXL04_008696PF13041.13PPR_23864121.5e-70233.8
LXL04_008696PF01535.27PPR3874123.3e-76247.1
LXL04_008696PF13041.13PPR_24144621.5e-70233.8
LXL04_008696PF01535.27PPR4174473.3e-76247.1
LXL04_008696PF29070.1MSC6_N4215111.2e-1454.9
LXL04_008696PF29070.1MSC6_N4806171.2e-1454.9
LXL04_008696PF01535.27PPR5966203.3e-76247.1
LXL04_008696PF20431.5E_motif6386994.7e-1143.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0C8Q8Arabidopsis thalianaPentatricopeptide repeat-containing protein At5g19020, mitochondrial51.687%Swiss-Protstrong database homology
Q9SHZ8Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2207033.068%Swiss-Protmoderate database homology
Q9SIT7Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g1360032.965%Swiss-Protmoderate database homology
Q9LUJ2Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g2269032.803%Swiss-Protmoderate database homology
Q9LN01Arabidopsis thalianaPentatricopeptide repeat-containing protein At1g08070, chloroplastic36.494%Swiss-Protmoderate database homology

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