LXL04_007231 | RubberDandelionOmics

Gene overview

LXL04_007231

Reference: OH-1004 Chr: Chr02 Coordinates: 40561129-40563366 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1017 bp · LXL04_007231|LXL04_007231|OH1004|cDNA

ATGATGCAAACAACGAAACTCTTAGATGCTCCAGAACCTTCAGTCGAAACCGACGATCGTGATGATACTCCTAACAGAAGGCGAACAATTCTGCAAATTTATCATCACTTCAATGTTTCGCCGACATGGAAGTTCTCAGAAACATCAAACGCAGGGGAAGAAGAGAAGCAGCAGATGAATAAGGCGCAGCCACCGCTTGATTTCAATGATTTCACCATTATCATAGAAGGAGAAGCTGAGATTTTTATGCACGCAAAAAA...

CDS

Download CDS FASTA

1017 bp · LXL04_007231|LXL04_007231|OH1004|CDS

ATGATGCAAACAACGAAACTCTTAGATGCTCCAGAACCTTCAGTCGAAACCGACGATCGTGATGATACTCCTAACAGAAGGCGAACAATTCTGCAAATTTATCATCACTTCAATGTTTCGCCGACATGGAAGTTCTCAGAAACATCAAACGCAGGGGAAGAAGAGAAGCAGCAGATGAATAAGGCGCAGCCACCGCTTGATTTCAATGATTTCACCATTATCATAGAAGGAGAAGCTGAGATTTTTATGCACGCAAAAAA...

Protein

Download Protein FASTA

338 aa · LXL04_007231|LXL04_007231|OH1004|PROTEIN

MMQTTKLLDAPEPSVETDDRDDTPNRRRTILQIYHHFNVSPTWKFSETSNAGEEEKQQMNKAQPPLDFNDFTIIIEGEAEIFMHAKNDFFYNKTQVNNRDLPIVVTGIIQIQTRRPELHLIIASATIEAKSMAEVFHNRKKRSQLEGEYNKLQIEPAILSVEGRGYNVKMFYVEEPVSDYLQATVSTVMSIHHKEPMGDILVFLTSQYDIDTAVQMITEEAQNSTKSSFGMIVLPLYSGLTRADQDLIFSPSPRGKRKVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007231`
TK1151 ID	TkA03G143900
OH-1004 ID	LXL04_007231
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 90.515 / OH-1004 98.817 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_007231

Location Chr02:40561129-40563366 (+)

Description Similar to At4g18465: Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g18465`	May be involved in pre-mRNA splicing.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007231 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000398 mRNA splicing, via spliceosome Biological Process

GO:0006396 RNA processing Biological Process

GO:0006397 mRNA processing Biological Process

GO:0007281 germ cell development Biological Process

GO:0008380 RNA splicing Biological Process

GO:0010172 embryonic body morphogenesis Biological Process

GO:0048589 developmental growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005681 spliceosomal complex Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT4G18465

cel:CELE_EEED8.5

ddi:DDB_G0291183

hsa:1659

mmu:217207

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.491

Rank 1 · LXL04_007231 · OH-1004

Cytoplasm0.469

Rank 2 · LXL04_007231 · OH-1004

Mitochondrion0.102

Rank 3 · LXL04_007231 · OH-1004

Cell membrane0.051

Rank 4 · LXL04_007231 · OH-1004

Endoplasmic reticulum0.045

Rank 5 · LXL04_007231 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00271.38Helicase_C187-284 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007231	`PF00271.38`	Helicase_C	187	284	7.2e-09	36.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4JRJ6`	Arabidopsis thaliana	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9	53.696%	Swiss-Prot	moderate database homology

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