LXL04_007158 | RubberDandelionOmics

Gene overview

LXL04_007158

Reference: OH-1004 Chr: Chr02 Coordinates: 37739088-37743547 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1680 bp · LXL04_007158|LXL04_007158|OH1004|cDNA

ATGTGGAGAAGAGGCTTTTGCAGCAGCACTGCGGCCTTAAACAACAAGAAATGGGACGCTCTTGTCATCGGCGGTGGTCACAACGGTCTTACTGCCGCTGCTTACCTAGCTCAATCAGGACTCTCTGTCGCCGTCCTTGAGCGCCGCCACCTTATTGGTGGTGCCGCCATCACCGAAGAACTCATCCCTGGTTTCAAGTTCTCCCGCTGCAGCTACCTCCAGAGCCTCCTTCGCCCTTCTATCATTAGAGATCTGGAGTT...

CDS

Download CDS FASTA

1680 bp · LXL04_007158|LXL04_007158|OH1004|CDS

ATGTGGAGAAGAGGCTTTTGCAGCAGCACTGCGGCCTTAAACAACAAGAAATGGGACGCTCTTGTCATCGGCGGTGGTCACAACGGTCTTACTGCCGCTGCTTACCTAGCTCAATCAGGACTCTCTGTCGCCGTCCTTGAGCGCCGCCACCTTATTGGTGGTGCCGCCATCACCGAAGAACTCATCCCTGGTTTCAAGTTCTCCCGCTGCAGCTACCTCCAGAGCCTCCTTCGCCCTTCTATCATTAGAGATCTGGAGTT...

Protein

Download Protein FASTA

559 aa · LXL04_007158|LXL04_007158|OH1004|PROTEIN

MWRRGFCSSTAALNNKKWDALVIGGGHNGLTAAAYLAQSGLSVAVLERRHLIGGAAITEELIPGFKFSRCSYLQSLLRPSIIRDLELHRHGLKLLKRSPSSFTPCLDGRYLLLGPDAELNHSEISKFSKRDADAYPSYENQLEKFCKFMDPLIDSSPPEVHQGVSSFNSRLKHRLHKSEFWAHCLHQSVSMGQQGLVDFMDLLLSPASNVLNRWFESEVLKATLATDAVIGTTANTQTPGSGYVLLHHVMGETDGDRGIW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_007158`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID	`LXL04_007158`
Location	Chr02:37739088-37743547 (+)
Description	Similar to PYROXD2: Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_007158` · GCA_047496595.1_OSU_TarKok_2.0.
GO annotations (OH1004 source)	GO:0007005 mitochondrion organization Biological Process GO:0005739 mitochondrion Cellular Component GO:0005759 mitochondrial matrix Cellular Component GO:0016491 oxidoreductase activity Molecular Function
KEGG gene cross-reference	bta:519120 hsa:84795 mmu:74580 rno:309381 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.919

Rank 1 · LXL04_007158 · OH-1004

Cytoplasm0.081

Rank 2 · LXL04_007158 · OH-1004

Nucleus0.050

Rank 3 · LXL04_007158 · OH-1004

Plastid0.026

Rank 4 · LXL04_007158 · OH-1004

Cell membrane0.026

Rank 5 · LXL04_007158 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01946.24Thi416-56 aa

PF01266.31DAO19-55 aa

PF12831.14FAD_oxidored19-56 aa

PF13450.13NAD_binding_822-69 aa

PF01593.31Amino_oxidase211-363 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_007158	`PF01946.24`	Thi4	16	56	3.5e-06	27.2
LXL04_007158	`PF01266.31`	DAO	19	55	5.6e-11	43.3
LXL04_007158	`PF12831.14`	FAD_oxidored	19	56	2.4e-06	27.8
LXL04_007158	`PF13450.13`	NAD_binding_8	22	69	1e-10	42.4
LXL04_007158	`PF01593.31`	Amino_oxidase	211	363	2.3e-13	51.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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