LXL04_006881 | RubberDandelionOmics

Gene overview

LXL04_006881

Reference: OH-1004 Chr: Chr02 Coordinates: 28637845-28642408 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1011 bp · LXL04_006881|LXL04_006881|OH1004|cDNA

ATGATGCAAGACCAACAAGATTTCTCTCCGGAAACCTACACCATTCCCGTCACTGCTGGAAAATGTCGACGATGGGGAAGAGAGATCTGGAAACCAGATCGCCGGCGACAATGTCCTACAGGAGCAATTCTTCACCACAGCCCTAGGTCATTTCTGAACGAGCTGAATCCTCACCAACGAGAAGATGCGGTGAGCACGCTGGCTTACGAGGCTGAAATGCGCCTCCGTGATCCTGTTTATGGCTGCGTCGGAGTCATTTC...

CDS

Download CDS FASTA

1011 bp · LXL04_006881|LXL04_006881|OH1004|CDS

ATGATGCAAGACCAACAAGATTTCTCTCCGGAAACCTACACCATTCCCGTCACTGCTGGAAAATGTCGACGATGGGGAAGAGAGATCTGGAAACCAGATCGCCGGCGACAATGTCCTACAGGAGCAATTCTTCACCACAGCCCTAGGTCATTTCTGAACGAGCTGAATCCTCACCAACGAGAAGATGCGGTGAGCACGCTGGCTTACGAGGCTGAAATGCGCCTCCGTGATCCTGTTTATGGCTGCGTCGGAGTCATTTC...

Protein

Download Protein FASTA

336 aa · LXL04_006881|LXL04_006881|OH1004|PROTEIN

MMQDQQDFSPETYTIPVTAGKCRRWGREIWKPDRRRQCPTGAILHHSPRSFLNELNPHQREDAVSTLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQIDLTSAKSELSKIPTFYCSQSFLNDELPLVFVRLTEEREHNVAPMLQTTLRSDLKRTNFTICLIFFKYMASMTTPIHHLQEQEMEIEAIKSILMDEFEGLSYNSLHVFHFIRFIKQSIIFNFKNQTCLATPKIHPSESGLNTSNRYFLIKLYLQDDETDESST...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006881`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006881

Location Chr02:28637845-28642408 (-)

Description Similar to LBD6: LOB domain-containing protein 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g65620`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0889400`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release
`UniProt: A2WXT0`	Negative regulator of cell proliferation in the adaxial side of leaves.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006881 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009943 adaxial/abaxial axis specification Biological Process

GO:0009944 polarity specification of adaxial/abaxial axis Biological Process

GO:0009954 proximal/distal pattern formation Biological Process

GO:0048441 petal development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0001216 DNA-binding transcription activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G65620

dosa:Os01g0889400

zma:100037816

zma:732739

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.415

Rank 1 · LXL04_006881 · OH-1004

Cytoplasm0.383

Rank 2 · LXL04_006881 · OH-1004

Mitochondrion0.225

Rank 3 · LXL04_006881 · OH-1004

Cell membrane0.061

Rank 4 · LXL04_006881 · OH-1004

Endoplasmic reticulum0.042

Rank 5 · LXL04_006881 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03195.20LOB50-104 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006881	`PF03195.20`	LOB	50	104	8.5e-15	55.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O04479`	Arabidopsis thaliana	Protein ASYMMETRIC LEAVES 2	86.441%	Swiss-Prot	weak database homology
`Q8LQH4`	Oryza sativa subsp. japonica	LOB domain-containing protein 6	74.576%	Swiss-Prot	weak database homology
`A2WXT0`	Oryza sativa subsp. indica	LOB domain-containing protein 6	74.576%	Swiss-Prot	weak database homology

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