LXL04_006217 | RubberDandelionOmics

Gene overview

LXL04_006217

Reference: OH-1004 Chr: Chr02 Coordinates: 4123456-4134852 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3189 bp · LXL04_006217|LXL04_006217|OH1004|cDNA

ATGGCGGAGAGAAAGGAGAAGGATGACGTGGACAGGAAGATCACGATTGGCGTTTGCGTTATGGAAAAGAAGGTGAAATGCGGCCTGGAGGTTTTCTCGGCGCCTATGGGGCAAATTCTGGAAAGGTTGCAAGCTTTTGGTGAATTTGAGATCATCCATTTCGGGGACAGAGTTATCCTAGAGGAACCTGTAGAGAgGTGGCCAATATGTGATTGTTTGATTGCTTTCCATTCTTCTGGGTATCCACTTGAaaaagctga...

CDS

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3189 bp · LXL04_006217|LXL04_006217|OH1004|CDS

ATGGCGGAGAGAAAGGAGAAGGATGACGTGGACAGGAAGATCACGATTGGCGTTTGCGTTATGGAAAAGAAGGTGAAATGCGGCCTGGAGGTTTTCTCGGCGCCTATGGGGCAAATTCTGGAAAGGTTGCAAGCTTTTGGTGAATTTGAGATCATCCATTTCGGGGACAGAGTTATCCTAGAGGAACCTGTAGAGAGGTGGCCAATATGTGATTGTTTGATTGCTTTCCATTCTTCTGGGTATCCACTTGAAAAAGCTGA...

Protein

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1062 aa · LXL04_006217|LXL04_006217|OH1004|PROTEIN

MAERKEKDDVDRKITIGVCVMEKKVKCGLEVFSAPMGQILERLQAFGEFEIIHFGDRVILEEPVERWPICDCLIAFHSSGYPLEKAEAYAALRKPFLVNELEQQHLLHDRRKVYECLESFGIPVPRYALVNREKPYQDLDYFVEEEDFVEVHGQRFGKPFVEKPIHGDDHSIMIYYPSSAGGGMKELFRKVGNRSSEFHPEVRRVRRESSYIYEEFMPTGGTDVKVYTVGPEYAHAEARKSPVVDGVVMRNPDGKEVRYP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006217`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006217

Location Chr02:4123456-4134852 (-)

Description Similar to VIP2: Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g15070`	Bifunctional inositol kinase that acts in concert with the IP6K kinases to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis-diphosphoinositol tetrakisphosphate, (PP)2-InsP4.	No verified direct reference in this release
`At3g01310`	Bifunctional inositol kinase that acts in concert with the IP6K kinases to synthesize the diphosphate group-containing inositol pyrophosphates diphosphoinositol pentakisphosphate, PP-InsP5, and bis- diphosphoinositol tetrakisphosphate, (PP)2-InsP4.	Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana.2006 · DOI: 10.1073/pnas.0606221103 VIH2 Regulates the Synthesis of Inositol Pyrophosphate InsP8 and Jasmonate-Dependent Defenses in Arabidopsis.2015 · DOI: 10.1105/tpc.114.135160

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006217 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006020 inositol metabolic process Biological Process

GO:0009861 jasmonic acid and ethylene-dependent systemic resistance Biological Process

GO:0032958 inositol phosphate biosynthetic process Biological Process

GO:0050832 defense response to fungus Biological Process

GO:1900367 positive regulation of defense response to insect Biological Process

GO:1904966 positive regulation of vitamin E biosynthetic process Biological Process

GO:1905036 positive regulation of antifungal innate immune response Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0000827 inositol-1,3,4,5,6-pentakisphosphate kinase activity Molecular Function

KEGG gene cross-reference

ath:AT3G01310

ath:AT5G15070

dme:Dmel_CG14616

mmu:227399

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.544

Rank 1 · LXL04_006217 · OH-1004

Nucleus0.309

Rank 2 · LXL04_006217 · OH-1004

Cell membrane0.182

Rank 3 · LXL04_006217 · OH-1004

Mitochondrion0.113

Rank 4 · LXL04_006217 · OH-1004

Endoplasmic reticulum0.076

Rank 5 · LXL04_006217 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF18086.8PPIP5K2_N14-109 aa

PF00328.28His_Phos_2369-950 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006217	`PF18086.8`	PPIP5K2_N	14	109	1.9e-36	124.8
LXL04_006217	`PF00328.28`	His_Phos_2	369	950	5.9e-72	243.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q84WW3`	Arabidopsis thaliana	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP2	81.599%	Swiss-Prot	strong database homology
`F4J8C6`	Arabidopsis thaliana	Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase VIP1	80.835%	Swiss-Prot	strong database homology

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