RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_005483
Reference: OH-1004 Chr: Chr01 Coordinates: 165178016-165180220 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1377 bp · LXL04_005483|LXL04_005483|OH1004|cDNA

ATGCCTACGATCACCGCCCGCGAAGTAGCCGTCATCGGCGCCGGAGCAGCTGGGCTAGTAGCCGCCCGTCACCTCCGGCGCGAGGGCCACTCCGTCGTCGTCTTCGAGAGAGAATCACAAGTCGGAGGTACTTGGATATACACCAACAAAACCGAACCCGATCCGATCGGCGTTGATCAAACTCGTCCGGTAGTCCAGTCCAGTCTCTACGCTTCTCTCCGCACTAACTTACCCCGAGAATCAATGAGCTTGAGGGAGTA...

CDS

Download CDS FASTA

1377 bp · LXL04_005483|LXL04_005483|OH1004|CDS

ATGCCTACGATCACCGCCCGCGAAGTAGCCGTCATCGGCGCCGGAGCAGCTGGGCTAGTAGCCGCCCGTCACCTCCGGCGCGAGGGCCACTCCGTCGTCGTCTTCGAGAGAGAATCACAAGTCGGAGGTACTTGGATATACACCAACAAAACCGAACCCGATCCGATCGGCGTTGATCAAACTCGTCCGGTAGTCCAGTCCAGTCTCTACGCTTCTCTCCGCACTAACTTACCCCGAGAATCAATGAGCTTGAGGGAGTA...

Protein

Download Protein FASTA

458 aa · LXL04_005483|LXL04_005483|OH1004|PROTEIN

MPTITAREVAVIGAGAAGLVAARHLRREGHSVVVFERESQVGGTWIYTNKTEPDPIGVDQTRPVVQSSLYASLRTNLPRESMSLREYPFVAKKSGHRDPRRFPGHREVLEYLKDYASEFAIGELVRFDTEVSRVSQRENGKWEVRSIQRKEDEEHIEEAFDAVVVCTGHYTDPRIAQIPGADRWPRKQIHSHNYRIPEPFRDQVSCELDLLWVVVIIGSSASAVDISREVASVAKEVHIASWSTSNEEGQNLPGYDNIWL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDLXL04_005483
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_005483
LocationChr01:165178016-165180220 (-)
DescriptionSimilar to At1g62620: Flavin-containing monooxygenase FMO GS-OX-like 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g62620 Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. No verified direct reference in this release
At1g63370 Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. No verified direct reference in this release
At1g62600 Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. No verified direct reference in this release
At1g12200 Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. No verified direct reference in this release
At1g62560 Catalyzes the conversion of methylthioalkyl glucosinolates of any chain length into methylsulfinylalkyl glucosinolates. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005483 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0019761 glucosinolate biosynthetic process Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0000325 plant-type vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004497 monooxygenase activity Molecular Function
GO:0004499 N,N-dimethylaniline monooxygenase activity Molecular Function
GO:0050660 flavin adenine dinucleotide binding Molecular Function
GO:0050661 NADP binding Molecular Function
GO:0080102 3-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function
GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity Molecular Function
KEGG gene cross-reference
ath:AT1G12200
ath:AT1G62560
ath:AT1G62600
ath:AT1G62620
ath:AT1G63370
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.761
Rank 1 · LXL04_005483 · OH-1004
Nucleus0.385
Rank 2 · LXL04_005483 · OH-1004
Peroxisome0.087
Rank 3 · LXL04_005483 · OH-1004
Mitochondrion0.063
Rank 4 · LXL04_005483 · OH-1004
Cell membrane0.035
Rank 5 · LXL04_005483 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00743.26FMO-like7-243 aa
PF07992.21Pyr_redox_28-239 aa
PF03486.21HI0933_like8-173 aa
PF12831.14FAD_oxidored8-86 aa
PF01266.31DAO9-44 aa
PF00890.31FAD_binding_29-44 aa
PF13454.13NAD_binding_910-169 aa
PF13450.13NAD_binding_811-45 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_005483PF00743.26FMO-like72433.4e-48165.1
LXL04_005483PF07992.21Pyr_redox_282393.5e-1556.9
LXL04_005483PF03486.21HI0933_like81735.1e-0730.1
LXL04_005483PF12831.14FAD_oxidored8868.7e-0729.3
LXL04_005483PF01266.31DAO9442.9e-1660.7
LXL04_005483PF00890.31FAD_binding_29443e-0730.7
LXL04_005483PF13454.13NAD_binding_9101691.1e-0836.0
LXL04_005483PF13450.13NAD_binding_811455.5e-1143.3
LXL04_005483PF01593.31Amino_oxidase17434.2e-1040.2
LXL04_005483PF13738.13Pyr_redox_3762663.6e-1969.8
LXL04_005483PF01266.31DAO1221962.9e-1660.7
LXL04_005483PF00743.26FMO-like2583833.4e-48165.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SXD5Arabidopsis thalianaFlavin-containing monooxygenase FMO GS-OX-like 360.179%Swiss-Protstrong database homology
Q9C8U0Arabidopsis thalianaFlavin-containing monooxygenase FMO GS-OX-like 559.732%Swiss-Protstrong database homology
Q94BV5Arabidopsis thalianaFlavin-containing monooxygenase FMO GS-OX-like 461.641%Swiss-Protstrong database homology
Q9FWW9Arabidopsis thalianaFlavin-containing monooxygenase FMO GS-OX-like 259.031%Swiss-Protstrong database homology
Q9SXE1Arabidopsis thalianaFlavin-containing monooxygenase FMO GS-OX353.712%Swiss-Protstrong database homology

JBrowse

View in Genome Browser