LXL04_005299 | RubberDandelionOmics

Gene overview

LXL04_005299

Reference: OH-1004 Chr: Chr01 Coordinates: 159918409-159923152 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1386 bp · LXL04_005299|LXL04_005299|OH1004|cDNA

ATGAAGATGGTCTCCATGAAAAATGTATGCGCTCTTCTATTTCTAGGTGTTTTATGTTGCATTTCTTCGGTTACTCCAACCGGGAACATCTCTAAAGGAACTGCTGACGGTTCCGAAACATGGGGATACGTAGAAGTTCGTCCTGGGGCGCAAATGTTTTGGTGGTTATATGAAAGTCCTAATAAACCCAACCATACATCCAAACCATGGCCTACAATTCTATGGCTCCAAGGAGGCCCTGGAGAGTCCGGAGTTGCATA...

CDS

Download CDS FASTA

1386 bp · LXL04_005299|LXL04_005299|OH1004|CDS

ATGAAGATGGTCTCCATGAAAAATGTATGCGCTCTTCTATTTCTAGGTGTTTTATGTTGCATTTCTTCGGTTACTCCAACCGGGAACATCTCTAAAGGAACTGCTGACGGTTCCGAAACATGGGGATACGTAGAAGTTCGTCCTGGGGCGCAAATGTTTTGGTGGTTATATGAAAGTCCTAATAAACCCAACCATACATCCAAACCATGGCCTACAATTCTATGGCTCCAAGGAGGCCCTGGAGAGTCCGGAGTTGCATA...

Protein

Download Protein FASTA

461 aa · LXL04_005299|LXL04_005299|OH1004|PROTEIN

MKMVSMKNVCALLFLGVLCCISSVTPTGNISKGTADGSETWGYVEVRPGAQMFWWLYESPNKPNHTSKPWPTILWLQGGPGESGVAYGNFGEIGPLDADLKSRNSTWLQKADLLFVDSPVGVGFSYVEDRSLCAKTDLETTIDLMTLLKVIYDGNETTESRPFYIFGEHYGGKVALTLGLAILQATKTEELKLQLEGVALGNSWISPEDYVFSWGPLLKDVSRIDEVGLNQSNRFEKVYKILALKIQDQIAKEEYEYATD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_005299`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_005299

Location Chr01:159918409-159923152 (+)

Description Similar to SCPL51: Serine carboxypeptidase-like 51

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g27920`	Probable carboxypeptidase.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_005299 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0042573 retinoic acid metabolic process Biological Process

GO:0045776 negative regulation of blood pressure Biological Process

GO:0097746 blood vessel diameter maintenance Biological Process

GO:0005576 extracellular region Cellular Component

GO:0048471 perinuclear region of cytoplasm Cellular Component

GO:0070062 extracellular exosome Cellular Component

GO:0004185 serine-type carboxypeptidase activity Molecular Function

KEGG gene cross-reference

ame:410451

ath:AT2G27920

hsa:59342

mmu:74617

rno:114861

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.521

Rank 1 · LXL04_005299 · OH-1004

Extracellular0.153

Rank 2 · LXL04_005299 · OH-1004

Endoplasmic reticulum0.134

Rank 3 · LXL04_005299 · OH-1004

Cytoplasm0.127

Rank 4 · LXL04_005299 · OH-1004

Cell membrane0.084

Rank 5 · LXL04_005299 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00450.29Peptidase_S1035-456 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_005299	`PF00450.29`	Peptidase_S10	35	456	5.5e-77	260.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q67Y83`	Arabidopsis thaliana	Serine carboxypeptidase-like 51	51.515%	Swiss-Prot	strong database homology

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