LXL04_004765 | RubberDandelionOmics

Gene overview

LXL04_004765

Reference: OH-1004 Chr: Chr01 Coordinates: 145656559-145657641 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

882 bp · LXL04_004765|LXL04_004765|OH1004|cDNA

ATGCATACTCCCAAATCCCAATTCCACACTCAAATTTCAACCACACCCAAGGCCGCCAAAATCACCACCGAACCTCAGCCCCTCCAACTGCAGGACCGGGTTGCAATCGTCACCGGCGGCTCTCGCGGTATCGGCAAAGCCATCTCCCTCTACCTCGCATCCCTTGGAGCAAAGCTCGTCGTTAATTACAGCTCCAATTCCTCTAAAGCGGACCAAGTTGTTTCTGAAATTAATTCCAAATCTCAATGTCAATCCCCACA...

CDS

Download CDS FASTA

882 bp · LXL04_004765|LXL04_004765|OH1004|CDS

ATGCATACTCCCAAATCCCAATTCCACACTCAAATTTCAACCACACCCAAGGCCGCCAAAATCACCACCGAACCTCAGCCCCTCCAACTGCAGGACCGGGTTGCAATCGTCACCGGCGGCTCTCGCGGTATCGGCAAAGCCATCTCCCTCTACCTCGCATCCCTTGGAGCAAAGCTCGTCGTTAATTACAGCTCCAATTCCTCTAAAGCGGACCAAGTTGTTTCTGAAATTAATTCCAAATCTCAATGTCAATCCCCACA...

Protein

Download Protein FASTA

293 aa · LXL04_004765|LXL04_004765|OH1004|PROTEIN

MHTPKSQFHTQISTTPKAAKITTEPQPLQLQDRVAIVTGGSRGIGKAISLYLASLGAKLVVNYSSNSSKADQVVSEINSKSQCQSPQAVSVKANVSDPIQVKALFDAAESVASPPINKGSESAFDSPLYILVNAVGVLDSTYSPIPTSSLEEFDRTFAVNTRGAYMCCKEAANRMKQGGGGRIICLTYSLVVALKPGYGSYAASKAAVEAMVKILAKELKGTRITANCVAPGPIATELFYEGKTEAMVNMVIEQCPLGRL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004765`
TK1151 ID	TkA01G112440
OH-1004 ID	LXL04_004765
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.200
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_004765

Location Chr01:145656559-145657641 (+)

Description Similar to At3g03980: NADPH-dependent aldehyde reductase-like protein, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g03980`	Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons.	No verified direct reference in this release
`At3g04000`	Aldehyde reductase that catalyzes the reduction of the aldehyde carbonyl groups on saturated and alpha,beta-unsaturated aldehydes with more than 5 carbons.	NADPH-dependent reductases involved in the detoxification of reactive carbonyls in plants.2011 · DOI: 10.1074/jbc.m110.202226

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_004765 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0045461 sterigmatocystin biosynthetic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0008106 alcohol dehydrogenase (NADP+) activity Molecular Function

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors Molecular Function

GO:0042469 versicolorin reductase activity Molecular Function

KEGG gene cross-reference

ani:ANIA_07806

ath:AT3G03980

ath:AT3G04000

ffu:CLAFUR5_12910

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · LXL04_004765 · OH-1004

Mitochondrion0.238

Rank 2 · LXL04_004765 · OH-1004

Nucleus0.215

Rank 3 · LXL04_004765 · OH-1004

Plastid0.156

Rank 4 · LXL04_004765 · OH-1004

Peroxisome0.154

Rank 5 · LXL04_004765 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00106.32adh_short33-239 aa

PF08659.17KR36-117 aa

PF13561.13adh_short_C242-292 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004765	`PF00106.32`	adh_short	33	239	1.2e-38	133.3
LXL04_004765	`PF08659.17`	KR	36	117	1e-06	29.5
LXL04_004765	`PF13561.13`	adh_short_C2	42	292	3.6e-50	171.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SQR4`	Arabidopsis thaliana	NADPH-dependent aldehyde reductase-like protein, chloroplastic	59.191%	Swiss-Prot	strong database homology
`Q9SQR2`	Arabidopsis thaliana	NADPH-dependent aldehyde reductase 2, chloroplastic	54.643%	Swiss-Prot	strong database homology

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