LXL04_004683 | RubberDandelionOmics

Gene overview

LXL04_004683

Reference: OH-1004 Chr: Chr01 Coordinates: 143325177-143326346 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1086 bp · LXL04_004683|LXL04_004683|OH1004|cDNA

ATGATGAAGCGGTCAGTGCGTCCATTATTCAGCGTTCTGCTTGTGTTTGCTGCCGCCGCCGCAACTCTCTGTTTTCGAATAATAGTGTCCGGCGCCTTCGGTGACCTGCTTAGCAATACGGAAGCCACGGAGAAGACCCCTCCAGTGTTTAATTCTGCTTTGCTGACGTTTGCTGCGGTTGATTTAGCTGAGAAGTCACTGAAACAAAACGTCGAGCTGCTTGTGGACATGGATTTCCGAAGCGATAACTTCAATCGCCA...

CDS

Download CDS FASTA

1086 bp · LXL04_004683|LXL04_004683|OH1004|CDS

ATGATGAAGCGGTCAGTGCGTCCATTATTCAGCGTTCTGCTTGTGTTTGCTGCCGCCGCCGCAACTCTCTGTTTTCGAATAATAGTGTCCGGCGCCTTCGGTGACCTGCTTAGCAATACGGAAGCCACGGAGAAGACCCCTCCAGTGTTTAATTCTGCTTTGCTGACGTTTGCTGCGGTTGATTTAGCTGAGAAGTCACTGAAACAAAACGTCGAGCTGCTTGTGGACATGGATTTCCGAAGCGATAACTTCAATCGCCA...

Protein

Download Protein FASTA

361 aa · LXL04_004683|LXL04_004683|OH1004|PROTEIN

MMKRSVRPLFSVLLVFAAAAATLCFRIIVSGAFGDLLSNTEATEKTPPVFNSALLTFAAVDLAEKSLKQNVELLVDMDFRSDNFNRQRSFLSAGLYRMDTGASARSVRRGPMDLRSPEFYNLWLEFRRYLRDWWGHRRYDPDVMSSIVNVLKTANMTGISGSRRKYRTCAVVGNSGILLKGSKTSLSFMNSNILHLCSRRGGCFCHPYGEKVPIMMYMSQPVHFLDYALCSSSHKSPLMITDPKLDILCARIVKYYSIKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_004683`
TK1151 ID	TkA01G125100
OH-1004 ID	LXL04_004683
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	88.100
Protein coverage (%)	TK1151 98.785 / OH-1004 59.834 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_004683

Location Chr01:143325177-143326346 (+)

Description Similar to GALT29A: Beta-1,6-galactosyltransferase GALT29A

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08280`	Galactosyltransferase involved in the biosynthesis of type II arabinogalactan.	Galactosyltransferases from Arabidopsis thaliana in the biosynthesis of type II arabinogalactan: molecular interaction enhances enzyme activity.2014 · DOI: 10.1186/1471-2229-14-90

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2WX64`	Possesses sialyltransferase-like activity in vitro.	No verified direct reference in this release
`Os01g0858900`	Possesses sialyltransferase-like activity in vitro.	Analysis of sialyltransferase-like proteins from Oryza sativa.2006 · DOI: 10.1093/jb/mvj029
`UniProt: A2XVC2`	Possesses sialyltransferase-like activity in vitro.	No verified direct reference in this release
`Os04g0506800`	Possesses sialyltransferase-like activity in vitro.	Analysis of sialyltransferase-like proteins from Oryza sativa.2006 · DOI: 10.1093/jb/mvj029

Functional annotation source

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Functional annotation source: OH1004 · LXL04_004683 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009101 glycoprotein biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0008373 sialyltransferase activity Molecular Function

GO:0008378 galactosyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G08280

dosa:Os01g0858900

dosa:Os04g0506800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.610

Rank 1 · LXL04_004683 · OH-1004

Endoplasmic reticulum0.153

Rank 2 · LXL04_004683 · OH-1004

Extracellular0.127

Rank 3 · LXL04_004683 · OH-1004

Cytoplasm0.105

Rank 4 · LXL04_004683 · OH-1004

Cell membrane0.081

Rank 5 · LXL04_004683 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00777.24Glyco_transf_29131-179 aa

PF00777.24Glyco_transf_29181-340 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_004683	`PF00777.24`	Glyco_transf_29	131	179	4.3e-22	79.5
LXL04_004683	`PF00777.24`	Glyco_transf_29	181	340	4.3e-22	79.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SGD2`	Arabidopsis thaliana	Beta-1,6-galactosyltransferase GALT29A	48.250%	Swiss-Prot	moderate database homology
`A2WX64`	Oryza sativa subsp. indica	Sialyltransferase-like protein 1	40.695%	Swiss-Prot	moderate database homology
`Q94DD4`	Oryza sativa subsp. japonica	Sialyltransferase-like protein 1	40.695%	Swiss-Prot	moderate database homology
`A2XVC2`	Oryza sativa subsp. indica	Sialyltransferase-like protein 3	45.486%	Swiss-Prot	moderate database homology
`Q7FA29`	Oryza sativa subsp. japonica	Sialyltransferase-like protein 3	45.486%	Swiss-Prot	moderate database homology

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