LXL04_003224 | RubberDandelionOmics

Gene overview

LXL04_003224

Reference: OH-1004 Chr: Chr01 Coordinates: 71358625-71360252 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1223 bp · LXL04_003224|LXL04_003224|OH1004|cDNA

tacattttttttattcACATCAAGTCATGAAGAAATCCGAACGACCAAAGGCATCAAAACGGGAAGATGGGGTCGATTTGATTAGTAAAATGCCGGATGCTATTCTTCTTTTGATTCTCTCACGTCTTTCATCCACTGGAGAACAAATTCGAAGCAGCATTTTGTCCAGAAGATGGAGGTATTTGTGGACTGCAGTTCCCTCAGTAGATATGCAGTTTTTATCCGAAGAAGAATCCAAACAAAGCCAGTTTAAAGAGTTT...

CDS

Download CDS FASTA

1197 bp · LXL04_003224|LXL04_003224|OH1004|CDS

ATGAAGAAATCCGAACGACCAAAGGCATCAAAACGGGAAGATGGGGTCGATTTGATTAGTAAAATGCCGGATGCTATTCTTCTTTTGATTCTCTCACGTCTTTCATCCACTGGAGAACAAATTCGAAGCAGCATTTTGTCCAGAAGATGGAGGTATTTGTGGACTGCAGTTCCCTCAGTAGATATGCAGTTTTTATCCGAAGAAGAATCCAAACAAAGCCAGTTTAAAGAGTTTGTGTATTGGGTTTTAGCATGCAAAAC...

Protein

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398 aa · LXL04_003224|LXL04_003224|OH1004|PROTEIN

MKKSERPKASKREDGVDLISKMPDAILLLILSRLSSTGEQIRSSILSRRWRYLWTAVPSVDMQFLSEEESKQSQFKEFVYWVLACKTVNLDSFRLSLYYCDSIATVWRWVRLAVTRNFKQFDFSFWTIKDTKPIELPHYLVSCSSLEVLRLDFRNHGLSLPKVVGFPALRVLHLTNVCLPEDDDLVNDFLKSFPLLEDLSLVGCLLRGLVRISYPNLKKLKIINWDDVGCHSIKISCPKLVDFDLGGCILKGSREIVQFL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_003224`
TK1151 ID	TkA01G384620
OH-1004 ID	LXL04_003224
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	93.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_003224

Location Chr01:71358625-71360252 (+)

Description Similar to At3g52680: F-box/FBD/LRR-repeat protein At3g52680

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g52680`	F-box/FBD/LRR-repeat protein At3g52680.	No verified direct reference in this release
`At5g56370`	FBD-associated F-box protein At5g56370.	No verified direct reference in this release
`At5g56420`	F-box/FBD/LRR-repeat protein At5g56420.	No verified direct reference in this release
`At1g51370`	F-box/FBD/LRR-repeat protein At1g51370.	No verified direct reference in this release
`At1g69630`	F-box/LRR-repeat protein 13.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_003224 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT1G51370

ath:AT1G69630

ath:AT3G52680

ath:AT5G56370

ath:AT5G56420

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.860

Rank 1 · LXL04_003224 · OH-1004

Cytoplasm0.189

Rank 2 · LXL04_003224 · OH-1004

Cell membrane0.039

Rank 3 · LXL04_003224 · OH-1004

Endoplasmic reticulum0.035

Rank 4 · LXL04_003224 · OH-1004

Plastid0.015

Rank 5 · LXL04_003224 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23622.2LRR_At1g61320_AtMIF194-300 aa

PF24758.2LRR_At5g56370108-239 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_003224	`PF23622.2`	LRR_At1g61320_AtMIF1	94	300	2.2e-09	37.9
LXL04_003224	`PF24758.2`	LRR_At5g56370	108	239	9.5e-15	55.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LXJ6`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At3g52680	32.735%	Swiss-Prot	moderate database homology
`Q9FM94`	Arabidopsis thaliana	FBD-associated F-box protein At5g56370	35.484%	Swiss-Prot	weak database homology
`Q9FM89`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At5g56420	31.418%	Swiss-Prot	moderate database homology
`Q6DBN6`	Arabidopsis thaliana	F-box/FBD/LRR-repeat protein At1g51370	29.075%	Swiss-Prot	weak database homology
`Q9FWZ1`	Arabidopsis thaliana	F-box/LRR-repeat protein 13	30.660%	Swiss-Prot	weak database homology

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