LXL04_002526 | RubberDandelionOmics

Gene overview

LXL04_002526

Reference: OH-1004 Chr: Chr01 Coordinates: 50859632-50861636 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

627 bp · LXL04_002526|LXL04_002526|OH1004|cDNA

ATGAGTGCTTCAAAGTTCATAAAATGTGTTTGTGTTGGCGATGGAGCCGTCGGCAAGACTTGTATGCTCATTTGTTATACCAGTAACAAGTTCCCCACTGATTATATTCCAACGGTATTTGACAATTTCAGTGCGAATGTAGCTGTGGATGGAAGTATAGTGAACTTGGGACTCTGGGATACTGCTGGTCAAGAAGATTACAGCAGATTAAGGCCACTAAGCTATAGAGGTGCAGACATTTTTGTGTTGGCCTTTTCTTT...

CDS

Download CDS FASTA

627 bp · LXL04_002526|LXL04_002526|OH1004|CDS

ATGAGTGCTTCAAAGTTCATAAAATGTGTTTGTGTTGGCGATGGAGCCGTCGGCAAGACTTGTATGCTCATTTGTTATACCAGTAACAAGTTCCCCACTGATTATATTCCAACGGTATTTGACAATTTCAGTGCGAATGTAGCTGTGGATGGAAGTATAGTGAACTTGGGACTCTGGGATACTGCTGGTCAAGAAGATTACAGCAGATTAAGGCCACTAAGCTATAGAGGTGCAGACATTTTTGTGTTGGCCTTTTCTTT...

Protein

Download Protein FASTA

208 aa · LXL04_002526|LXL04_002526|OH1004|PROTEIN

MSASKFIKCVCVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPDVPVVLVGTKLDLRDDKGYLADHSGFDPITYAQGEELRKQIGAVAYVECSSKTQQNIKAVFDTSIKVVLQPPRRMEVTTRHKRRKSSGCLGIVCGSCAA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_002526`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_002526

Location Chr01:50859632-50861636 (+)

Description Similar to ARAC7: Rac-like GTP-binding protein ARAC7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28950`	Acts as a negative regulator of abscisic acid (ABA) responses.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os05g0513800`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release
`Os01g0229400`	Small GTPase playing a general role in disease resistance signaling pathway.	No verified direct reference in this release
`Os02g0742200`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release
`Os06g0234200`	Inactive GDP-bound Rho GTPases reside in the cytosol, are found in a complex with Rho GDP-dissociation inhibitors (Rho GDIs), and are released from the GDI protein in order to translocate to membranes upon activation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002526 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007015 actin filament organization Biological Process

GO:0007163 establishment or maintenance of cell polarity Biological Process

GO:0007165 signal transduction Biological Process

GO:0007264 small GTPase-mediated signal transduction Biological Process

GO:0008360 regulation of cell shape Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0030865 cortical cytoskeleton organization Biological Process

GO:0032956 regulation of actin cytoskeleton organization Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005856 cytoskeleton Cellular Component

KEGG gene cross-reference

ath:AT4G28950

dosa:Os01g0229400

dosa:Os02g0742200

dosa:Os05g0513800

dosa:Os06g0234200

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.557

Rank 1 · LXL04_002526 · OH-1004

Cytoplasm0.369

Rank 2 · LXL04_002526 · OH-1004

Nucleus0.120

Rank 3 · LXL04_002526 · OH-1004

Golgi apparatus0.114

Rank 4 · LXL04_002526 · OH-1004

Endoplasmic reticulum0.068

Rank 5 · LXL04_002526 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00071.29Ras8-177 aa

PF08477.20Roc8-121 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_002526	`PF00071.29`	Ras	8	177	4.3e-49	166.9
LXL04_002526	`PF08477.20`	Roc	8	121	5.8e-23	82.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O82480`	Arabidopsis thaliana	Rac-like GTP-binding protein ARAC7	85.714%	Swiss-Prot	strong database homology
`Q68Y52`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 2	84.058%	Swiss-Prot	strong database homology
`Q9SSX0`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 1	82.143%	Swiss-Prot	strong database homology
`Q6Z808`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 3	73.892%	Swiss-Prot	strong database homology
`Q67VP4`	Oryza sativa subsp. japonica	Rac-like GTP-binding protein 4	81.111%	Swiss-Prot	strong database homology

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