Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1684 bp · LXL04_002227|LXL04_002227|OH1004|cDNA
AAACAAGATATATATGGATATGCCAGTCACCAATCATTCACGGCCTCCACCCCTATTCTAACATTTCTTCGCTGAAATGCCAGGTACCTTGAGGAGTTCAAAGATCTTGATAGTATTTGCTTCAATTCTACTCTTCGTGGTCGGAGTTAACTCCAACTTCGTGAAATCATCATGCAGCGTCACTCTCCACCCTGACCTATGCTACTCCACGCTTTCCGGCGTATCGGAAAAGGTCAACACGCCAAAGGACTTCATCGGAC...
1608 bp · LXL04_002227|LXL04_002227|OH1004|CDS
ATGCCAGGTACCTTGAGGAGTTCAAAGATCTTGATAGTATTTGCTTCAATTCTACTCTTCGTGGTCGGAGTTAACTCCAACTTCGTGAAATCATCATGCAGCGTCACTCTCCACCCTGACCTATGCTACTCCACGCTTTCCGGCGTATCGGAAAAGGTCAACACGCCAAAGGACTTCATCGGACTGGCTGTCAACAAAACCAAGGAGATAGTCCAACAGAACTACTTCACCATAAAGAAGCTTACACTTAGGACCAATCT...
Protein
Download Protein FASTA535 aa · LXL04_002227|LXL04_002227|OH1004|PROTEIN
MPGTLRSSKILIVFASILLFVVGVNSNFVKSSCSVTLHPDLCYSTLSGVSEKVNTPKDFIGLAVNKTKEIVQQNYFTIKKLTLRTNLTKRETIALHDCLEMVADTLQELNQVIVLLDEYPAKKGIRRYVDDIITLMSTTLTNQETCVDGFSHDKHDRQVRESLIGGEINAGRMCSNSLAMIKNMTDTDMASEVKINGRKLKEDWPEWLSAGDRRLLQSGTVTPNVVVAADGSGDFTTVSAAVAAAPNRSTTRYVIRIAAG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002227 |
|---|---|
| TK1151 ID | TkA01G472810 |
| OH-1004 ID | LXL04_002227 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 99.300 |
| Protein coverage (%) | TK1151 99.022 / OH-1004 75.701Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002227 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:44277592-44279368 (-) | |||||||||
| Description | Similar to Pectinesterase 3 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0009617 response to bacterium Biological Process GO:0009620 response to fungus Biological Process GO:0009624 response to nematode Biological Process GO:0010043 response to zinc ion Biological Process GO:0010187 negative regulation of seed germination Biological Process GO:0010468 regulation of gene expression Biological Process GO:0042545 cell wall modification Biological Process GO:0042742 defense response to bacterium Biological Process GO:0045490 pectin catabolic process Biological Process GO:0048364 root development Biological Process GO:0050829 defense response to Gram-negative bacterium Biological Process GO:0050832 defense response to fungus Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT1G53830 ath:AT3G14310 cit:102578056 sly:544016 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF04043.21PMEI27-180 aaPF01095.26Pectinesterase224-520 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002227 | PF04043.21 | PMEI | 27 | 180 | 6.9e-30 | 105.0 |
| LXL04_002227 | PF01095.26 | Pectinesterase | 224 | 520 | 8.2e-142 | 472.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.