Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1224 bp · LXL04_002026|LXL04_002026|OH1004|cDNA
ATGTCGCTAACGAGTGTGAAGATGTCGGAGGATGTGTGGCTAACATGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATTATGGGGCTTCTTCTCGGTGATATACAGCACTCCAAAAATGGAAGCGTGACTGCCCTAATTTGGGGAGCATTACCACAACCACGATGTGATAGACAGAAGGACCGTGTTGAGACAAATCCTGAGCAAACAACAAGAGTAATTGGCTGGTATCATTCACATCCTCATATCACAGTCCT...
1224 bp · LXL04_002026|LXL04_002026|OH1004|CDS
ATGTCGCTAACGAGTGTGAAGATGTCGGAGGATGTGTGGCTAACATGTCTCACTCATGCATTGTCCACCGAGACTGAAGAAATTATGGGGCTTCTTCTCGGTGATATACAGCACTCCAAAAATGGAAGCGTGACTGCCCTAATTTGGGGAGCATTACCACAACCACGATGTGATAGACAGAAGGACCGTGTTGAGACAAATCCTGAGCAAACAACAAGAGTAATTGGCTGGTATCATTCACATCCTCATATCACAGTCCT...
Protein
Download Protein FASTA407 aa · LXL04_002026|LXL04_002026|OH1004|PROTEIN
MSLTSVKMSEDVWLTCLTHALSTETEEIMGLLLGDIQHSKNGSVTALIWGALPQPRCDRQKDRVETNPEQTTRVIGWYHSHPHITVLPSHVDVRTQAMYQLLDSGFIGLIFSCFNEDQYKVGRIQVTAFQSLDGKQNQVLKQNFSPINKSSIIDLESSISSTENSLTNSGPTQSLEYDTGDSKASAITLKGGAKPSALKGFFANADTLNTESGIVDIDPMDMSESMQEAMHRSNMEMSGAEYVRKEVPLHVLPTLSLVNL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_002026 |
|---|---|
| TK1151 ID | TkA01G489720 |
| OH-1004 ID | LXL04_002026 |
| Relationship / confidence | Rbh Sequence Supported / Probable |
| Protein identity (%) | 93.900 |
| Protein coverage (%) | TK1151 75.000 / OH-1004 99.754Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_002026 |
|---|---|
| Location | Chr01:39781198-39783723 (+) |
| Description | Similar to brcc3: Lys-63-specific deubiquitinase BRCC36 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006302 double-strand break repair Biological Process GO:0006508 proteolysis Biological Process GO:0007095 mitotic G2 DNA damage checkpoint signaling Biological Process GO:0010212 response to ionizing radiation Biological Process GO:0045739 positive regulation of DNA repair Biological Process GO:0051301 cell division Biological Process GO:0070536 protein K63-linked deubiquitination Biological Process GO:0140861 DNA repair-dependent chromatin remodeling Biological Process GO:0000922 spindle pole Cellular Component GO:0005634 nucleus Cellular Component GO:0005737 cytoplasm Cellular Component GO:0070552 BRISC complex Cellular Component |
| KEGG gene cross-reference | dre:100333845 sasa:100195855 xtr:549211 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01398.27JAB3-101 aaPF14464.12Prok-JAB10-96 aaPF18110.7BRCC36_C264-346 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_002026 | PF01398.27 | JAB | 3 | 101 | 7.6e-16 | 58.7 |
| LXL04_002026 | PF14464.12 | Prok-JAB | 10 | 96 | 3.4e-07 | 30.9 |
| LXL04_002026 | PF18110.7 | BRCC36_C | 264 | 346 | 5.4e-22 | 78.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.