Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1485 bp · LXL04_001611|LXL04_001611|OH1004|cDNA
ATGGAAGGATGGGGAGGAATCTGTAAAtggaaaaagaagaaagaagatcCTAGGAAGGACGAAAAAATATGTGCCTACGCCAGTGGAAAGTTTAAAGTCATGCAATCCATAATCGATGCAGAAATCAATGCATGCATAAATTCTTTGGAGAAGTTAAAGATATACTATCTTGACAAAAAGGAAATAACCCTCAGAACGGACTGCCAAGCTAGTGTTAGTTTCTACAATAAAACTAATAGTAATAAGGCATCTAGGGTTAG...
1485 bp · LXL04_001611|LXL04_001611|OH1004|CDS
ATGGAAGGATGGGGAGGAATCTGTAAATGGAAAAAGAAGAAAGAAGATCCTAGGAAGGACGAAAAAATATGTGCCTACGCCAGTGGAAAGTTTAAAGTCATGCAATCCATAATCGATGCAGAAATCAATGCATGCATAAATTCTTTGGAGAAGTTAAAGATATACTATCTTGACAAAAAGGAAATAACCCTCAGAACGGACTGCCAAGCTAGTGTTAGTTTCTACAATAAAACTAATAGTAATAAGGCATCTAGGGTTAG...
Protein
Download Protein FASTA494 aa · LXL04_001611|LXL04_001611|OH1004|PROTEIN
MEGWGGICKWKKKKEDPRKDEKICAYASGKFKVMQSIIDAEINACINSLEKLKIYYLDKKEITLRTDCQASVSFYNKTNSNKASRVRWLKFADIITGTGLQIYIEHIDGKQNVLANSLSRLVNLCFAGCTEQVQAKEVMMKSLQITEKLLQDIAQSRNVKSSYEQITQISGLCHRFILARLPSSNQEPCIDTIKSKPPQLQYHWQNQVPMQVAQQLERTAATEAVAALRHLHAILDFKAQTTTGEITGPKSKDKIRKPDE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001611 |
|---|---|
| TK1151 ID | TkA08G190110 |
| OH-1004 ID | LXL04_001611 |
| Relationship / confidence | Non Reciprocal Best Hit / Complex relationship |
| Protein identity (%) | 66.700 |
| Protein coverage (%) | TK1151 31.034 / OH-1004 7.287Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001611 |
|---|---|
| Location | Chr01:30071133-30081351 (-) |
| Description | Similar to Polyprotein P3 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0046718 symbiont entry into host cell Biological Process GO:0046740 transport of virus in host, cell to cell Biological Process GO:0075732 viral penetration into host nucleus Biological Process GO:0019028 viral capsid Cellular Component GO:0042025 host cell nucleus Cellular Component GO:0043657 host cell Cellular Component GO:0003676 nucleic acid binding Molecular Function GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function GO:0004523 RNA-DNA hybrid ribonuclease activity Molecular Function |
| KEGG gene cross-reference | vg:1489542 vg:1489554 vg:1489557 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF17917.8RT_RNaseH15-90 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001611 | PF17917.8 | RT_RNaseH | 15 | 90 | 3.6e-07 | 31.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.