LXL04_001334 | RubberDandelionOmics

Gene overview

LXL04_001334

Reference: OH-1004 Chr: Chr01 Coordinates: 24358452-24361123 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1284 bp · LXL04_001334|LXL04_001334|OH1004|cDNA

ATGGCATCTGCCAGTTTAGGACATGGTGGAGTAGGATCTTCAAGAACAGTTAGTGGATTCAATGAATCTTCAAGTGCTTCTGCAGTTGATCGATTAGGTAGAGGAATGCTTGAAATGAGACTCAGGGACAAAGTGGAACGTGATGATGATAAAGTCAGTGATATTGAACCAGTGATGGTACATGGGGCGGGTACAGAAGCTGGACATGTAATAAGAACAACAATCGGAGGGCGTAATGGTCAACCTGAACAGACTGTGAG...

CDS

Download CDS FASTA

1284 bp · LXL04_001334|LXL04_001334|OH1004|CDS

ATGGCATCTGCCAGTTTAGGACATGGTGGAGTAGGATCTTCAAGAACAGTTAGTGGATTCAATGAATCTTCAAGTGCTTCTGCAGTTGATCGATTAGGTAGAGGAATGCTTGAAATGAGACTCAGGGACAAAGTGGAACGTGATGATGATAAAGTCAGTGATATTGAACCAGTGATGGTACATGGGGCGGGTACAGAAGCTGGACATGTAATAAGAACAACAATCGGAGGGCGTAATGGTCAACCTGAACAGACTGTGAG...

Protein

Download Protein FASTA

427 aa · LXL04_001334|LXL04_001334|OH1004|PROTEIN

MASASLGHGGVGSSRTVSGFNESSSASAVDRLGRGMLEMRLRDKVERDDDKVSDIEPVMVHGAGTEAGHVIRTTIGGRNGQPEQTVSYIAEHVIGTGSFGVVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNVVALKHSFFSTTEKDELYLNLVLDFVPETVSRTARHYTRMNQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001334`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001334

Location Chr01:24358452-24361123 (-)

Description Similar to ASK10: Shaggy-related protein kinase kappa

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g09840`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At1g57870`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release
`At5g14640`	May mediate extracellular signals to regulate transcription in differentiating cells.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001334 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006972 hyperosmotic response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0030154 cell differentiation Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0106310 protein serine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT1G09840

ath:AT1G57870

ath:AT5G14640

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590

Rank 1 · LXL04_001334 · OH-1004

Nucleus0.552

Rank 2 · LXL04_001334 · OH-1004

Cell membrane0.060

Rank 3 · LXL04_001334 · OH-1004

Mitochondrion0.040

Rank 4 · LXL04_001334 · OH-1004

Endoplasmic reticulum0.029

Rank 5 · LXL04_001334 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase89-372 aa

PF07714.24PK_Tyr_Ser-Thr91-289 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001334	`PF00069.32`	Pkinase	89	372	2.5e-61	208.1
LXL04_001334	`PF07714.24`	PK_Tyr_Ser-Thr	91	289	8.5e-24	85.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q39019`	Arabidopsis thaliana	Shaggy-related protein kinase kappa	82.588%	Swiss-Prot	strong database homology
`Q9FVS6`	Arabidopsis thaliana	Shaggy-related protein kinase delta	82.734%	Swiss-Prot	strong database homology
`Q8VZD5`	Arabidopsis thaliana	Shaggy-related protein kinase epsilon	75.300%	Swiss-Prot	strong database homology

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