LXL04_001325 | RubberDandelionOmics

Gene overview

LXL04_001325

Reference: OH-1004 Chr: Chr01 Coordinates: 24049007-24050017 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

606 bp · LXL04_001325|LXL04_001325|OH1004|cDNA

ATGGTACCAAATCAGTTAACGCCATCAATACCACAAGCCGCTGGAAACCGCTTTCCATCTTCTTCACTAGTCACGACACCTGAACTGCAGCAGGAATTGATATCGATGACAACCAAGGAGCGGAAGATACTGGTGGCGGTGGACGAAGGCGAGGAGAGCACGTACGCGCTGTCCTGGTGCCTGAAAAACCTTGTCACCGAGAATTCAAAAGACACCCTCGTCCTCCTCTACGTCAAACCACCGCAGGTCGTCTACACAGC...

CDS

Download CDS FASTA

606 bp · LXL04_001325|LXL04_001325|OH1004|CDS

ATGGTACCAAATCAGTTAACGCCATCAATACCACAAGCCGCTGGAAACCGCTTTCCATCTTCTTCACTAGTCACGACACCTGAACTGCAGCAGGAATTGATATCGATGACAACCAAGGAGCGGAAGATACTGGTGGCGGTGGACGAAGGCGAGGAGAGCACGTACGCGCTGTCCTGGTGCCTGAAAAACCTTGTCACCGAGAATTCAAAAGACACCCTCGTCCTCCTCTACGTCAAACCACCGCAGGTCGTCTACACAGC...

Protein

Download Protein FASTA

201 aa · LXL04_001325|LXL04_001325|OH1004|PROTEIN

MVPNQLTPSIPQAAGNRFPSSSLVTTPELQQELISMTTKERKILVAVDEGEESTYALSWCLKNLVTENSKDTLVLLYVKPPQVVYTALDGTGYLFSPDIIATMDNYRNQVAESVIEKAKKLCKDLQDVKVETRVENGDARDVICDVAEKMGVDMVVLGTHGYGMIKRAFLGSVSNHCAQNAKCPVLIVRKPKTSGAATSTS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001325`
TK1151 ID	TkA01G547620
OH-1004 ID	LXL04_001325
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 82.587 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001325

Location Chr01:24049007-24050017 (-)

Description Similar to At3g01520: Universal stress protein A-like protein

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g01520`	Universal stress protein A-like protein.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_001325 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0005524 ATP binding Molecular Function

GO:0016208 AMP binding Molecular Function

KEGG gene cross-reference

ath:AT3G01520

bsu:BSU39250

mja:MJ_0531

mja:MJ_0577

sha:SH1215

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.402

Rank 1 · LXL04_001325 · OH-1004

Cell membrane0.279

Rank 2 · LXL04_001325 · OH-1004

Nucleus0.255

Rank 3 · LXL04_001325 · OH-1004

Endoplasmic reticulum0.112

Rank 4 · LXL04_001325 · OH-1004

Lysosome / Vacuole0.096

Rank 5 · LXL04_001325 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00582.33Usp41-189 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001325	`PF00582.33`	Usp	41	189	2.1e-33	116.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LGG8`	Arabidopsis thaliana	Universal stress protein A-like protein	28.736%	Swiss-Prot	weak database homology

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