Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2088 bp · LXL04_001235|LXL04_001235|OH1004|cDNA
ATGGAATCTAAGGCCAGCCGCCGGCTTCAAACTATTCAAAACCACATCACCTCTGTCGCCGGCGATCCTCAGTCAACGGTGCAACCTAACCAGACAGCCGGAGAGTTCTTCACTGAACAAGGGTACAGTATCGTTCTCCCAGAGAAATTGCAGACAGGAAAGTGGAATGTTTACAGATCTGCAATCGCTCCTCTGAAACTAGTCAGTAGATTTCCTGATCATCCTGACATCGGTACCTTGCATGATAACTTTGTGCATGC...
2088 bp · LXL04_001235|LXL04_001235|OH1004|CDS
ATGGAATCTAAGGCCAGCCGCCGGCTTCAAACTATTCAAAACCACATCACCTCTGTCGCCGGCGATCCTCAGTCAACGGTGCAACCTAACCAGACAGCCGGAGAGTTCTTCACTGAACAAGGGTACAGTATCGTTCTCCCAGAGAAATTGCAGACAGGAAAGTGGAATGTTTACAGATCTGCAATCGCTCCTCTGAAACTAGTCAGTAGATTTCCTGATCATCCTGACATCGGTACCTTGCATGATAACTTTGTGCATGC...
Protein
Download Protein FASTA695 aa · LXL04_001235|LXL04_001235|OH1004|PROTEIN
MESKASRRLQTIQNHITSVAGDPQSTVQPNQTAGEFFTEQGYSIVLPEKLQTGKWNVYRSAIAPLKLVSRFPDHPDIGTLHDNFVHASETFKDYKYLGTRIRADGTIGEYTWTTYGEAATARSAIGSGLVAHGIPKGSCIGLYFINRPEWLIVDHACSAYSYISVPLYDTLGPDAVKYIVNHSSAQAIFCVPQTLHILLSFLSEIPSVRLIVVVGGLDELMPSLPSATGVKVVSFSKLITQGSSNHHPFRPPKPDDVSTI...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_001235 |
|---|---|
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_001235 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:22567634-22572211 (-) | |||||||||
| Description | Similar to LACS7: Long chain acyl-CoA synthetase 7, peroxisomal | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000038 very long-chain fatty acid metabolic process Biological Process GO:0001666 response to hypoxia Biological Process GO:0001676 long-chain fatty acid metabolic process Biological Process GO:0006631 fatty acid metabolic process Biological Process GO:0006637 acyl-CoA metabolic process Biological Process GO:0007584 response to nutrient Biological Process GO:0008654 phospholipid biosynthetic process Biological Process GO:0009629 response to gravity Biological Process GO:0009651 response to salt stress Biological Process GO:0010193 response to ozone Biological Process GO:0010747 positive regulation of long-chain fatty acid import across plasma membrane Biological Process GO:0015908 fatty acid transport Biological Process | |||||||||
| KEGG gene cross-reference | ath:AT3G05970 ath:AT5G27600 hsa:23305 mmu:216739 rno:117243 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00501.35AMP-binding108-507 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_001235 | PF00501.35 | AMP-binding | 108 | 507 | 1.6e-90 | 304.4 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.