LXL04_001206 | RubberDandelionOmics

Gene overview

LXL04_001206

Reference: OH-1004 Chr: Chr01 Coordinates: 21970757-21971863 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1107 bp · LXL04_001206|LXL04_001206|OH1004|cDNA

ATGTCAGACCAAATCCCATTCCATATTCAAGAGGAAATCATGAACCGACTTCCCGTGAAATCATTGGTTCAATTCAGATGTGTCTCAAAAGCATGGAAGTCTTTGATCGATAGCTCCGAGTTCATTGCTGCTCACAGTCTCCGCCGCCACACTCAGCCTCATTATCTGCTCGTATCATATGAAAATCCACTAGTAGAAGAAGACTATGTCCTCTTCTCCCGATGTTATACCAATGACGACATTTTCCCCCAACAATCGTA...

CDS

Download CDS FASTA

1107 bp · LXL04_001206|LXL04_001206|OH1004|CDS

ATGTCAGACCAAATCCCATTCCATATTCAAGAGGAAATCATGAACCGACTTCCCGTGAAATCATTGGTTCAATTCAGATGTGTCTCAAAAGCATGGAAGTCTTTGATCGATAGCTCCGAGTTCATTGCTGCTCACAGTCTCCGCCGCCACACTCAGCCTCATTATCTGCTCGTATCATATGAAAATCCACTAGTAGAAGAAGACTATGTCCTCTTCTCCCGATGTTATACCAATGACGACATTTTCCCCCAACAATCGTA...

Protein

Download Protein FASTA

368 aa · LXL04_001206|LXL04_001206|OH1004|PROTEIN

MSDQIPFHIQEEIMNRLPVKSLVQFRCVSKAWKSLIDSSEFIAAHSLRRHTQPHYLLVSYENPLVEEDYVLFSRCYTNDDIFPQQSYVPTLPQSVKQLILPSVVGSSQGLLCLHGSHPNFQTHMAVLWNPSIRKSIAVLMPYFGVCPYTRDPIQPSIGFGVCPITNDPKIVANTSSSEFMIYTLSTGKWRSLPTNLPPKRIQGLFYSVVIDRFIYWEVELKDLKTIMSFDLISESFELIDLPDSLACGDPWVVSISKLRD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001206`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001206

Location Chr01:21970757-21971863 (-)

Description Similar to At1g47730: Putative F-box protein At1g47730

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g47730`	Putative F-box protein At1g47730.	No verified direct reference in this release
`At3g23880`	F-box/kelch-repeat protein At3g23880.	No verified direct reference in this release
`At3g06240`	F-box/kelch-repeat protein At3g06240.	No verified direct reference in this release
`At1g47790`	Putative F-box protein At1g47790.	No verified direct reference in this release
`At2g21930`	F-box protein At2g21930.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001206 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G47730

ath:AT1G47790

ath:AT2G21930

ath:AT3G06240

ath:AT3G23880

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.667

Rank 1 · LXL04_001206 · OH-1004

Nucleus0.388

Rank 2 · LXL04_001206 · OH-1004

Cell membrane0.105

Rank 3 · LXL04_001206 · OH-1004

Endoplasmic reticulum0.073

Rank 4 · LXL04_001206 · OH-1004

Lysosome / Vacuole0.042

Rank 5 · LXL04_001206 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00646.39F-box4-41 aa

PF08268.18FBA_393-285 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001206	`PF00646.39`	F-box	4	41	8e-11	42.1
LXL04_001206	`PF08268.18`	FBA_3	93	285	1.5e-12	47.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SXA0`	Arabidopsis thaliana	Putative F-box protein At1g47730	26.190%	Swiss-Prot	weak database homology
`Q9LIR8`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g23880	26.623%	Swiss-Prot	weak database homology
`Q8GXC7`	Arabidopsis thaliana	F-box/kelch-repeat protein At3g06240	25.990%	Swiss-Prot	weak database homology
`Q9FZF8`	Arabidopsis thaliana	Putative F-box protein At1g47790	26.087%	Swiss-Prot	weak database homology
`Q9SJ06`	Arabidopsis thaliana	F-box protein At2g21930	25.641%	Swiss-Prot	weak database homology

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