LXL04_001117 | RubberDandelionOmics

Gene overview

LXL04_001117

Reference: OH-1004 Chr: Chr01 Coordinates: 20591053-20605553 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

4140 bp · LXL04_001117|LXL04_001117|OH1004|cDNA

ATGGCTATGGTTAGAGCACTGGTGAATGAAAGGCCTGTGGTTATATTCAGCAAAAGCTCATGCTGCATGTGCTACACCATTAAGAAACTCATAAGCAGCTTTGGTGCAAATCCTACGGTTTATGAGTTAGATGAGCATCCAGAGGGGAAGCAGATAGAGAAGGAACTGAAAGGATTAGAATGCAAGCCAAGTGTGCCAGCTGTCTTCATAGGAGAGGAGCTCATTGGTGGGGCCAATGAAATAATGAGCCTTCATCTCAA...

CDS

Download CDS FASTA

4140 bp · LXL04_001117|LXL04_001117|OH1004|CDS

ATGGCTATGGTTAGAGCACTGGTGAATGAAAGGCCTGTGGTTATATTCAGCAAAAGCTCATGCTGCATGTGCTACACCATTAAGAAACTCATAAGCAGCTTTGGTGCAAATCCTACGGTTTATGAGTTAGATGAGCATCCAGAGGGGAAGCAGATAGAGAAGGAACTGAAAGGATTAGAATGCAAGCCAAGTGTGCCAGCTGTCTTCATAGGAGAGGAGCTCATTGGTGGGGCCAATGAAATAATGAGCCTTCATCTCAA...

Protein

Download Protein FASTA

1379 aa · LXL04_001117|LXL04_001117|OH1004|PROTEIN

MAMVRALVNERPVVIFSKSSCCMCYTIKKLISSFGANPTVYELDEHPEGKQIEKELKGLECKPSVPAVFIGEELIGGANEIMSLHLKGQLGAKISDIEDLSVNVYVTNFPTSMTTMDLRRLCERHGKVLDVYIAQKLSKIGKRFAFVRFLKSKDLKHVHVVEELRRVWVGSYHLFATWARLNKDDAKEQKPTKAATNNSKTQERTNVITSTNHVKVSAEGGIKSYTSVIRNNSGNNSRSTHEEEVVNHNRPTKVFNLLEQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_001117`
TK1151 ID	TkA01G559620
OH-1004 ID	LXL04_001117
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	87.200
Protein coverage (%)	TK1151 84.564 / OH-1004 20.885 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_001117

Location Chr01:20591053-20605553 (-)

Description Similar to GRXS2: Monothiol glutaredoxin-S2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g18600`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At3g62930`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At1g03020`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15680`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release
`At4g15690`	May only reduce GSH-thiol disulfides, but not protein disulfides.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_001117 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000122 negative regulation of transcription by RNA polymerase II Biological Process

GO:0010167 response to nitrate Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0046872 metal ion binding Molecular Function

GO:0051537 2 iron, 2 sulfur cluster binding Molecular Function

KEGG gene cross-reference

ath:AT1G03020

ath:AT3G62930

ath:AT4G15680

ath:AT4G15690

ath:AT5G18600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.589

Rank 1 · LXL04_001117 · OH-1004

Nucleus0.320

Rank 2 · LXL04_001117 · OH-1004

Cell membrane0.120

Rank 3 · LXL04_001117 · OH-1004

Endoplasmic reticulum0.051

Rank 4 · LXL04_001117 · OH-1004

Mitochondrion0.036

Rank 5 · LXL04_001117 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00462.31Glutaredoxin13-75 aa

PF00076.29RRM_1104-157 aa

PF00078.33RVT_1843-931 aa

PF13966.12zf-RVT1223-1288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_001117	`PF00462.31`	Glutaredoxin	13	75	2.4e-12	47.6
LXL04_001117	`PF00076.29`	RRM_1	104	157	6.3e-08	33.1
LXL04_001117	`PF00078.33`	RVT_1	843	931	6.2e-12	46.5
LXL04_001117	`PF13966.12`	zf-RVT	1223	1288	7.4e-14	52.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L8Z8`	Arabidopsis thaliana	Monothiol glutaredoxin-S2	64.444%	Swiss-Prot	weak database homology
`Q9LYC8`	Arabidopsis thaliana	Monothiol glutaredoxin-S6	60.638%	Swiss-Prot	weak database homology
`Q9SA68`	Arabidopsis thaliana	Monothiol glutaredoxin-S1	58.696%	Swiss-Prot	weak database homology
`O23419`	Arabidopsis thaliana	Monothiol glutaredoxin-S4	56.667%	Swiss-Prot	weak database homology
`O23420`	Arabidopsis thaliana	Monothiol glutaredoxin-S5	55.556%	Swiss-Prot	weak database homology

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