LXL04_000836 | RubberDandelionOmics

Gene overview

LXL04_000836

Reference: OH-1004 Chr: Chr01 Coordinates: 15513718-15517352 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1812 bp · LXL04_000836|LXL04_000836|OH1004|cDNA

ATGCAGAGTTGCAATTGGGGGATTTCGGGTTTTTCAGTTGATGCAGTCTGCAGAGTTCTTGTAAACTCCAGTTACAAATTTTGCCATATAATGCCAGCCTTGATTCATGAAGATACGAGCACTCATTTGGGGACAAGTGGGGATGATAAGAAAAGAGTTAGGGCTAGATCTTTGAAGAAGAAAGCAATGGTTGCATCAACAAGACCGATAAACTCAATCAAAACAAGAAGTAATAAGCGCGTATCAAATTGCAAGTTTGC...

CDS

Download CDS FASTA

1812 bp · LXL04_000836|LXL04_000836|OH1004|CDS

ATGCAGAGTTGCAATTGGGGGATTTCGGGTTTTTCAGTTGATGCAGTCTGCAGAGTTCTTGTAAACTCCAGTTACAAATTTTGCCATATAATGCCAGCCTTGATTCATGAAGATACGAGCACTCATTTGGGGACAAGTGGGGATGATAAGAAAAGAGTTAGGGCTAGATCTTTGAAGAAGAAAGCAATGGTTGCATCAACAAGACCGATAAACTCAATCAAAACAAGAAGTAATAAGCGCGTATCAAATTGCAAGTTTGC...

Protein

Download Protein FASTA

603 aa · LXL04_000836|LXL04_000836|OH1004|PROTEIN

MQSCNWGISGFSVDAVCRVLVNSSYKFCHIMPALIHEDTSTHLGTSGDDKKRVRARSLKKKAMVASTRPINSIKTRSNKRVSNCKFASISIDDVRDEEEEKVVNAFRQILIEKDLLPHRHDDYHTLLRFLKARKFDIDKAVQMWTDMLNWRKDYGADSILKDFVYNEYEEVQSYYPHGYHGVDKEGRPIYIERLGKVDPTKLMNVTTVDRFLRYHVQGFEKAFFEKFPACSVAARRHIDSCTTILDVHGMNWMSFGKVAH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000836`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000836

Location Chr01:15513718-15517352 (-)

Description Similar to SFH9: Phosphatidylinositol/phosphatidylcholine transfer protein SFH9

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g24840`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At4g39170`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At2g18180`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At2g21520`	Required for transport of secretory proteins from the Golgi complex.	No verified direct reference in this release
`At4g39180`	Required for transport of secretory proteins from the Golgi complex (By similarity).	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000836 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006656 phosphatidylcholine biosynthetic process Biological Process

GO:0006892 post-Golgi vesicle-mediated transport Biological Process

GO:0015031 protein transport Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0008526 phosphatidylinositol transfer activity Molecular Function

KEGG gene cross-reference

ath:AT2G18180

ath:AT3G24840

ath:AT4G39170

ath:AT4G39180

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.213

Rank 1 · LXL04_000836 · OH-1004

Plastid0.187

Rank 2 · LXL04_000836 · OH-1004

Cytoplasm0.177

Rank 3 · LXL04_000836 · OH-1004

Cell membrane0.175

Rank 4 · LXL04_000836 · OH-1004

Golgi apparatus0.156

Rank 5 · LXL04_000836 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03765.22CRAL_TRIO_N116-146 aa

PF00650.26CRAL_TRIO174-335 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000836	`PF03765.22`	CRAL_TRIO_N	116	146	1.6e-08	35.3
LXL04_000836	`PF00650.26`	CRAL_TRIO	174	335	4.9e-32	111.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4J7S8`	Arabidopsis thaliana	Phosphatidylinositol/phosphatidylcholine transfer protein SFH9	52.083%	Swiss-Prot	strong database homology
`F4JVA6`	Arabidopsis thaliana	Phosphatidylinositol/phosphatidylcholine transfer protein SFH6	62.145%	Swiss-Prot	moderate database homology
`Q9SI13`	Arabidopsis thaliana	Phosphatidylinositol/phosphatidylcholine transfer protein SFH10	43.738%	Swiss-Prot	moderate database homology
`F4IHJ0`	Arabidopsis thaliana	Phosphatidylinositol/phosphatidylcholine transfer protein SFH8	61.587%	Swiss-Prot	moderate database homology
`F4JVA9`	Arabidopsis thaliana	Phosphatidylinositol/phosphatidylcholine transfer protein SFH2	43.948%	Swiss-Prot	moderate database homology

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