Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1065 bp · LXL04_000696|LXL04_000696|OH1004|cDNA
ATGGGGAAACGAAAGGGGCGTCAATCACAGTCAGAGAACACAGACATCCTAAATCACTCTAATGGAGGAGAAGATGAATCTAGAAATGGACGATCAGATGATTTAGAAGAAGGCGAGAAATCAGGGTTCTTCGCTTGCTATTTGTTGACGTCACTCTGCCCTAGATACAAAGGACACACCTACATCGGGTTCACTGTGAACCCAAGGCGGCGAATTAGGCAACACAATGGGGAATTATGCAGTGGTGCATTCAGGACCAA...
1065 bp · LXL04_000696|LXL04_000696|OH1004|CDS
ATGGGGAAACGAAAGGGGCGTCAATCACAGTCAGAGAACACAGACATCCTAAATCACTCTAATGGAGGAGAAGATGAATCTAGAAATGGACGATCAGATGATTTAGAAGAAGGCGAGAAATCAGGGTTCTTCGCTTGCTATTTGTTGACGTCACTCTGCCCTAGATACAAAGGACACACCTACATCGGGTTCACTGTGAACCCAAGGCGGCGAATTAGGCAACACAATGGGGAATTATGCAGTGGTGCATTCAGGACCAA...
Protein
Download Protein FASTA354 aa · LXL04_000696|LXL04_000696|OH1004|PROTEIN
MGKRKGRQSQSENTDILNHSNGGEDESRNGRSDDLEEGEKSGFFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGELCSGAFRTKKKRPWEMVLCIYGFPTNVAALQFEWAWQHPVESLAVRKAAVGFKSLGGLANKIKLAYTMLTLPTWNNLKLNVNFFSTKYTKHYAGCPTLPTHMRVHIRSMDELPCYTEGFEEQEEDDMFGFGNNFHDDDDDDMNKDQEQEQEGPTSVSDAENLQEPALVFSDHQNNEEEEEEE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000696 |
|---|---|
| TK1151 ID | TkA01G593120 |
| OH-1004 ID | LXL04_000696 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 87.400 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000696 |
|---|---|
| Location | Chr01:12850446-12852072 (-) |
| Description | Similar to Slx1b: Structure-specific endonuclease subunit SLX1 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0000724 double-strand break repair via homologous recombination Biological Process GO:0006260 DNA replication Biological Process GO:0006281 DNA repair Biological Process GO:0010792 DNA double-strand break processing involved in repair via single-strand annealing Biological Process GO:0010833 telomere maintenance via telomere lengthening Biological Process GO:0032204 regulation of telomere maintenance Biological Process GO:0061820 telomeric D-loop disassembly Biological Process GO:0090656 t-circle formation Biological Process GO:1904357 negative regulation of telomere maintenance via telomere lengthening Biological Process GO:1904431 positive regulation of t-circle formation Biological Process GO:0000228 nuclear chromosome Cellular Component GO:0005654 nucleoplasm Cellular Component |
| KEGG gene cross-reference | bta:510858 hsa:548593 hsa:79008 mmu:75764 nve:5504005 rno:293489 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01541.31GIY-YIG46-117 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000696 | PF01541.31 | GIY-YIG | 46 | 117 | 2.9e-13 | 50.6 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.